Skip to main content

Table 2 Significantly altered processes

From: Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata: Extending MapMan ontology for grapevine

BIN

Upregulated processes/protein families

Number of DE genes

Total number of genes in BIN

p-value

10.5

cell wall.cell wall proteins

8

54

0.006

10.5.3

cell wall.cell wall proteins.LRR

4

35

0.006

16

secondary metabolism

44

190

< 0.0001

16.1

secondary metabolism.isoprenoids

9

57

0.008

16.2

secondary metabolism.phenylpropanoids

15

45

< 0.0001

16.2.1

secondary metabolism.phenylpropanoids.lignin biosynthesis

14

31

< 0.0001

16.8

secondary metabolism.flavonoids

18

55

< 0.0001

16.8.2

secondary metabolism.flavonoids.chalcones

5

9

0.0009

16.8.3

secondary metabolism.flavonoids.dihydroflavonols

6

16

0.004

17.5.1

hormone metabolism.ethylene.synthesis-degradation

6

32

0.01

20

stress

49

396

0.001

20.1

stress.biotic

26

157

< 0.0001

20.1.7

stress.biotic.PR-proteins

20

64

< 0.0001

26.4

misc.beta 1,3 glucan hydrolases

3

19

0.005

27

RNA

57

970

0.01

27.3

RNA.regulation of transcription

53

737

0.01

29.5.15

protein.degradation.inhibitors

4

14

0.007

  1. Significantly altered processes or protein families according to changes in gene expression level in symptomatic compared to healthy grapevine leaf samples. The results show numbers of genes annotated to each process or family (indent) and corresponding p-values (as calculated by MapMan Wilcoxon rank sum test) according to the MapMan gene ontology.