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Table 2 Significantly altered processes

From: Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata: Extending MapMan ontology for grapevine

BIN Upregulated processes/protein families Number of DE genes Total number of genes in BIN p-value
10.5 cell wall.cell wall proteins 8 54 0.006
10.5.3 cell wall.cell wall proteins.LRR 4 35 0.006
16 secondary metabolism 44 190 < 0.0001
16.1 secondary metabolism.isoprenoids 9 57 0.008
16.2 secondary metabolism.phenylpropanoids 15 45 < 0.0001
16.2.1 secondary metabolism.phenylpropanoids.lignin biosynthesis 14 31 < 0.0001
16.8 secondary metabolism.flavonoids 18 55 < 0.0001
16.8.2 secondary metabolism.flavonoids.chalcones 5 9 0.0009
16.8.3 secondary metabolism.flavonoids.dihydroflavonols 6 16 0.004
17.5.1 hormone metabolism.ethylene.synthesis-degradation 6 32 0.01
20 stress 49 396 0.001
20.1 stress.biotic 26 157 < 0.0001
20.1.7 stress.biotic.PR-proteins 20 64 < 0.0001
26.4 misc.beta 1,3 glucan hydrolases 3 19 0.005
27 RNA 57 970 0.01
27.3 RNA.regulation of transcription 53 737 0.01
29.5.15 protein.degradation.inhibitors 4 14 0.007
  1. Significantly altered processes or protein families according to changes in gene expression level in symptomatic compared to healthy grapevine leaf samples. The results show numbers of genes annotated to each process or family (indent) and corresponding p-values (as calculated by MapMan Wilcoxon rank sum test) according to the MapMan gene ontology.