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Table 1 SSR repeats identified in the sequenced cDNA clones.

From: Development and diversity of Andean-derived, gene-based microsatellites for common bean (Phaseolus vulgaris L.)

SSR type1

5' sequences

3' sequences

total

Percentage of total

Proportion 5' end

Di-nucleotides

181

28

209

42.1

86.6

   ac/gt/ca/tg

44

4

48

9.7

91.7

   ag/ct/ga/tc

124

13

137

27.6

90.5

   at/ta

13

11

24

4.8

54.2

   gc/cg

0

0

0

0.0

--

Tri-nucleotides

194

30

224

45.1

86.6

   aag/aga/gaa/ttc/tct/ctt

24

1

25

5.0

96.0

   aat/ata/taa/tta/tat/att

2

7

9

1.8

22.2

   aac/aca/caa/ttg/tgt/gtt

34

2

36

7.2

94.4

   acc/cac/cca/tgg/gtg/ggt

19

2

21

4.2

90.5

   agc/cag/gca/tcg/gtc/cgt

68

15

83

16.7

81.9

   agg/gag/gga/tcc/ctc/cct

30

2

32

6.4

93.8

   atc/cat/tca/tag/gta/agt

4

1

5

1.0

80.0

   ccg/gcc/cgc/ggc/cgg/gcg

8

0

8

1.6

100.0

   gac/cga/acg/ctg/gct/tgc

5

0

5

1.0

100.0

Tetra-nucleotides

31

20

51

10.3

60.8

Penta-nucleotide

11

2

13

2.6

84.6

Total

417

80

497

100.0

-

  1. 1Complementary sequences for a given motif are given and were the basis for grouping of di-nucleotide and tri-nucleotide motif SSR.