Table 2 Gene ontology based on molecular function for selected repressed genes of arsenic-treated Arabidopsis thaliana Columbia plants.
From: Transcriptional responses of Arabidopsis thaliana plants to As (V) stress
Molecular function | Gene ID | Locus | FC | RP |
|---|---|---|---|---|
Catalase activity | catalase 3 (SEN2) | at1g20620 | -1.59 | 191.7 |
Peroxidase activity | peroxidase | at3g49120 | -1.77 | 165.3 |
| Â | peroxidase | at5g64120 | -1.84 | 123.2 |
| Â | cationic peroxidase | at4g25980 | -1.52 | 333.1 |
Oxidoreductase activity | superoxide dismutase [Fe], chloroplast | at4g25100 | -5.17 | 1.7 |
| Â | lipoxygenase | at1g72520 | -2.41 | 242.9 |
| Â | FAD-binding domain-containing protein | at1g26380 | -1.50 | 293.0 |
| Â | cytochrome p450 83B1 | at4g31500 | -1.71 | 142.3 |
| Â | auxin-responsive family protein | at5g35735 | -1.59 | 156.4 |
Metal ion binding | germin-like protein | at5g39160 | -1.51 | 319.7 |
| Â | germin-like protein | at5g39190 | -2.13 | 27.3 |
| Â | calcium-binding EF hand family protein | at1g76650 | -2.00 | 50.4 |
| Â | C2-domain containing protein | at4g34150 | -1.53 | 313.4 |
| Â | touch-responsive protein/calmodulin-related | at2g41100 | -1.64 | 137.9 |
| Â | ferritin 1 (FER 1) | at5g01600 | -1.78 | 83.0 |
| Â | ferritin 4 | at3g56090 | -1.52 | 201.0 |
| Â | zinc finger (C2H2 type) protein | at3g46090 | -1.51 | 191.2 |
| Â | zinc finger (C2H2 type) protein | at3g46080 | -1.59 | 178.8 |
| Â | zinc finger (C3HC4 type) protein | at5g27420 | -1.75 | 82.2 |
Hydrolase activity | lipase class 3 family protein | at1g02660 | -1.56 | 218.8 |
| Â | invertase/pectin methylesterase family protein | at5g62360 | -1.75 | 85.0 |
| Â | protein phosphatase 2C | at2g30020 | -1.52 | 237.4 |
| Â | phosphoric monoester hydrolase | at1g73010 | -3.01 | 7.0 |
| Â | acid phosphatase type 5 (ACP5) | at3g17790 | -1.62 | 290.7 |
| Â | phosphoric monoester hydrolase | at1g17710 | -1.88 | 118.6 |
| Â | glycosyl hydrolase family 17 protein | at3g55430 | -1.53 | 201.2 |
| Â | glycosyl hydrolase family 17 protein | at4g31140 | -1.71 | 248.5 |
| Â | glycosyl hydrolase family 17 protein | at4g19810 | -1.96 | 99.2 |
| Â | glycosyl hydrolase family 36 protein | at5g20250 | -1.52 | 201.8 |
| Â | xyloglucan endotransglucosylase/hydrolase | at4g30280 | -1.63 | 172.2 |
| Â | xyloglucan endotransglucosylase/hydrolase | at4g14130 | -2.00 | 47.9 |
| Â | xyloglucan endotransglucosylase/hydrolase | at5g57560 | -1.68 | 97.3 |
| Â | nudix hydrolase homolog 4 | at1g18300 | -1.54 | 215.9 |
| Â | MERI-5 endo-xyloglucan transferase | at4g30270 | -1.96 | 45.6 |
Protein binding | calmodulin-binding family protein | at4g33050 | -1.78 | 88.6 |
| Â | ankyrin repeat family protein | at5g45110 | -1.58 | 252.0 |
| Â | mitochondrial substrate carrier family protein | at4g24570 | -1.50 | 260.2 |
| Â | polygalacturonase inhibitory protein | at5g06860 | -1.91 | 65.0 |
Chitin binding | hevein-like protein (HEL) | at3g04720 | -1.53 | 499.9 |
Carbohydrate binding | legume lectin family protein | at3g16530 | -2.03 | 37.8 |
Sugar binding | curculin-like lectin family protein | at1g78830 | -1.64 | 138.3 |
ATP binding | ATP-dependent Clp protease ATP-binding subunit | at5g51070 | -1.51 | 188.7 |
Jasmonic acid synthesis | allene oxide cyclase | at3g25760 | -1.54 | 279.6 |
Peptidase activity | vacuolar processing enzyme gamma | at4g32940 | -1.65 | 117.1 |
| Â | subtilase family protein | at1g32970 | -1.91 | 81.1 |
Ligase activity | v-box domain-containing protein | at2g35930 | -1.63 | 205.5 |
| Â | asparagine synthetase 1 | at3g47340 | -1.74 | 75.5 |
Transferase activity | glutathione S-transferase (GSTF6); phi class | at1g02930 | -2.10 | 62.9 |
| Â | glutathione S-transferase (GSTF7); phi class | at1g02920 | -2.88 | 7.6 |
| Â | branched-chain amino acid amino transferase 2 | at1g10070 | -1.60 | 113.8 |
Nutrient reservoir activity | patatin | at2g26560 | -1.81 | 84.8 |
Kinase activity | serine/threonine protein kinase 19 | at3g08720 | -1.55 | 249.8 |
Molecular function unknown | hypothetical protein no ATG start | at3g09922 | -2.15 | 33.6 |
| Â | expressed protein | at2g25510 | -1.99 | 96.9 |
| Â | expressed protein no ATG start | at5g03545 | -2.72 | 16.8 |
| Â | expressed protein | at5g42530 | -2.01 | 147.4 |
| Â | expressed protein | at4g31570 | -2.21 | 45.6 |
| Â | expressed protein | at1g69890 | -1.73 | 79.9 |
| Â | expressed protein | at5g20790 | -2.33 | 32.7 |
| Â | expressed protein | at2g04460 | -1.73 | 190.5 |
| Â | VQ motif-containing protein | at2g22880 | -1.83 | 57.3 |
| Â | glycine-rich protein | at1g07135 | -1.53 | 167.4 |
| Â | glycine-rich protein | at3g04640 | -1.81 | 73.9 |
| Â | glycine-rich protein | at2g05540 | -1.85 | 47.9 |
| Â | glycine-rich protein | at2g05380 | -1.59 | 146.7 |
| Â | integral membrane family protein | at4g15610 | -1.58 | 139.7 |
| Â | gibberellin-responsive protein | at1g22690 | -1.88 | 51.5 |
| Â | gibberellin-regulated protein (GASA1) | at1g75750 | -1.70 | 93.7 |
| Â | dehydrin (RAB18) | at5g66400 | -1.70 | 81.1 |
|  | unknown protein – similar to glycosyltransferase | at2g41640 | -1.54 | 185.8 |
| Â | patatin-like protein 8 | at4g29800 | -1.52 | 198.7 |
| Â | phosphate-responsive protein | at5g64260 | -1.52 | 221.0 |
| Â | phosphate-responsive protein | at1g35140 | -1.58 | 131.5 |
| Â | similar to LITAF-domain containing protein | at5g13190 | -1.54 | 293.4 |
Transcription factor activity | DRE-binding protein | at1g12610 | -1.74 | 116.8 |
| Â | AP2 domain-containing transcription factor | at4g34410 | -2.01 | 50.4 |
| Â | zinc finger (C2H2 type) protein | at3g46090 | -1.51 | 191.2 |
| Â | zinc finger (C2H2 type) protein | at3g46080 | -1.59 | 178.8 |
| Â | WRKY family transcription factor 33 | at2g38470 | -1.63 | 157.9 |
| Â | WRKY family transcription factor 53 | at4g23810 | -1.55 | 278.3 |
| Â | WRKY family transcription factor 40 | at1g80840 | -1.88 | 70.9 |
| Â | NAC domain-containing protein | at5g08790 | -1.53 | 238.7 |
Senescence-related | senescence-associated family protein | at5g66040 | -1.55 | 164.0 |
| Â | senescence/dehydration-associated protein | at2g17840 | -1.60 | 256.9 |
| Â | senescence-associated protein (SEN1) | at4g35770 | -1.59 | 123.9 |
| Â | SRG3 (senescence-related gene 3) | at3g02040 | -2.65 | 11.0 |
Transporter activity | MATE efflux family protein | at1g61890 | -1.80 | 108.3 |
Galactolipid biosynthesis | monogalactosyldiacylglycerol synthase type C | at2g11810 | -1.78 | 130.5 |
Electron transport | cytochrome p450 family 94 subfamily B | at3g48520 | -1.56 | 249.8 |
Guanosine tetraphosphate metabolism | RSH 2 (RELA-SPOT HOMOLOG) | at3g14050 | -1.52 | 188.7 |
N-terminal protein myristoylation | band 7 family protein | at3g01290 | -1.54 | 253.4 |