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Table 2 Measures of nucleotide diversity and Tajima's D

From: Identification of Single Nucleotide Polymorphisms and analysis of Linkage Disequilibrium in sunflower elite inbred lines using the candidate gene approach

Gene SIa θw πT πsil πsyn πnonosyn πnonsynsyn N° haplotypes Haplotype diversity Tajima's D
GO 0 0.0009 0.0004 0.0003 0 0.0005 - 3 0.205 -1.51
PGIP3 3 0.0013 0.0018 0.0050 0.0062 0 0 4 0.725 1.10
LZP 0 0 0 0 0 0 - 2 0.281b -
GLP 0 0 0 0 0 0 - 3 0.433b -
MADSB-TF3 5 0.0034 0.0025 0.0027 0.0159 0.0018 0.1141 9 0.801 -1.02
AALP 6 0.0119 0.0117 0.0203 0.0143 0 0 4 0.661 -0.08
LIM 5 0.0056 0.0076 0.0117 0.0092 0 0 4 0.579 1.13
RL41 1 0.0087 0.0071 0 0 0.0145 - 3 0.556 -0.50
ANT 9 0.0122 0.0225 0.0841 0.0888 0 0 2 0.526 2.93***c
RS16 5 0.0047 0.0066 0.0206 0.0294 0 0 3 0.573 1.36
NsLTP 5 0.0068 0.0077 0.0084 0.0380 0.0057 0.1504 3 0.433 0.42
SEM 1 0.0038 0.0018 0.0027 0 0 - 3 0.205 -1.42
SAMC 7 0.0093 0.0084 0.0134 0.0357 0.0007 0.0204 5 0.684 -0.34
GCvT 2 0.0047 0.0064 0.0253 0.0270 0 0 3 0.579 0.95
SBP 6 0.0142 0.0137 0.0523 0.0550 0 0 5 0.760 -0.14
LHCP 8 0.0063 0.0079 0.0268 0.0313 0.0011 0.0341 3 0.602 0.8266
CPSI 2 0.0068 0.0041 0.0101 0.0059 0.0010 0.1616 2 0.298 -1.17
PSI-III-CAB 1 0.0004 0.0006 0.0010 0 0 - 2 0.409 0.79
CAB 7 0.0038 0.0059 0.0136 0.0203 0 0 3 0.485 1.91
CAM 18 0.0155 0.0137 0.0166 0.0217 0 0 6 0.801 -0.44
CHS 0 0 0 0 0 0 - 1 0.000 -
GAPDH 1 0.0008 0.0007 0.0017 0 0 - 3 0.485 -0.24
GIA 2 0.0008 0.0005 0.0011 0.0016 0 0 2 0.199 -0.73
GPX 0 0 0 0 0 0 - 2 0.256b -
GST 31 0.0204 0.0277 0.0464 0.0636 0.0080 0.1254 9 0.772 1.44
PGIC 13 0.0081 0.0055 0.0074 0.0021 0.0012 0.5673 4 0.298 -1.19
SCR1 3 0.0012 0.0018 0.0076 0.0079 0 0 3 0.649 1.39
SCR2 7 0.0040 0.0037 0.0126 0.0126 0.0009 0.0721 3 0.374 -0.26
Average 5.29 0.0056 0.0061 0.0140 0.0174 0.0013 0.0655 3.54 0.497  
  1. aParsimony informative sites (SI) used to measure nucleotide diversity.
  2. bThe number of haplotypes and haplotype diversity values was obtained by using indel polymorphisms.
  3. cTajima's D significant p < 0.001.
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