BMC Plant Biology

Table 6 Codon usage in Elaeis guineensis

From: Oil palm (Elaeis guineensisJacq.) tissue culture ESTs: Identifying genes associated with callogenesis and embryogenesis

		Second Letter
		U				C				A				G
First Letter	U	UUU	Phe	803	0.90	UCU	Ser	590	1.34	UAU	Tyr	733	1.04	UGU	Cys	242	0.76	U	Third Letter
		UUC	Phe	980	1.10	UCC	Ser	468	1.06	UAC	Tyr	683	0.96	UGC	Cys	391	1.24	C
		UUA	Leu	244	0.38	UCA	Ser	490	1.11	UAA	STOP	65	0.92	UGA	STOP	89	1.27	A
		UUG	Leu	745	1.17	UCG	Ser	260	0.59	UAG	STOP	57	0.81	UGG	Trp	456	1.00	G
	C	CUU	Leu	988	1.55	CCU	Pro	667	1.36	CAU	His	546	1.14	CGU	Arg	417	0.96	U
		CUC	Leu	817	1.28	CCC	Pro	459	0.94	CAC	His	411	0.86	CGC	Arg	409	0.94	C
		CUA	Leu	251	0.39	CCA	Pro	605	1.24	CAA	Gln	552	0.72	CGA	Arg	236	0.54	A
		CUG	Leu	775	1.22	CCG	Pro	228	0.47	CAG	Gln	981	1.28	CGG	Arg	330	0.76	G
	A	AUU	Ile	1007	1.20	ACU	Thr	654	1.24	AAU	Asn	878	1.00	AGU	Ser	348	0.79	U
		AUC	Ile	1087	1.29	ACC	Thr	669	1.27	AAC	Asn	885	1.00	AGC	Ser	495	1.12	C
		AUA	Ile	431	0.51	ACA	Thr	501	0.95	AAA	Lys	1072	0.56	AGA	Arg	503	1.15	A
		AUG	Met	1078	1.00	ACG	Thr	279	0.53	AAG	Lys	2735	1.44	AGG	Arg	718	1.65	G
	G	GUU	Val	1038	1.30	GCU	Ala	1200	1.38	GAU	Asp	1433	1.24	GGU	Gly	876	1.15	U
		GUC	Val	822	1.03	GCC	Ala	893	1.03	GAC	Asp	886	0.76	GGC	Gly	676	0.89	C
		GUA	Val	340	0.42	GCA	Ala	971	1.12	GAA	Glu	1184	0.78	GGA	Gly	884	1.16	A
		GUG	Val	1001	1.25	GCG	Ala	416	0.48	GAG	Glu	1834	1.22	GGG	Gly	610	0.80	G

Codon usage was calculated from 211 ORFs containing 44,372 codons.

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ISSN: 1471-2229

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