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Table 10 Distribution of ESTs in NEC, EC and EMB tissue at a significance threshold of 0.001

From: Oil palm (Elaeis guineensisJacq.) tissue culture ESTs: Identifying genes associated with callogenesis and embryogenesis

  

Distribution of ESTs

Distribution of ESTs (Normalized)b

 

Unigene ID

Putative identitya

NEC

EC

EMB

NEC

EC

EMB

p-value

cn0010

No significant similarity

12

0

0

18.5

0

0

0.000006

cn0011

No significant similarity

11

2

0

16.9

7.4

0

0.000110

cn0037

Ribosomal protein S3

282

20

34

433.8

73.6

40.6

0.000000

cn0076

No significant similarity

7

0

0

10.8

0

0

0.000938

cn0209

No significant similarity

8

0

0

12.3

0

0

0.000346

cn0279

No significant similarity

13

0

0

19.1

0

0

0.000002

cn0305

No significant similarity

7

0

0

10.8

0

0

0.000938

cn0321

No significant similarity

10

0

0

15.4

0

0

0.000047

cn0345

Aspartic proteinase oryzasin 1 precursor

13

0

2

19.1

0

2.4

0.000195

cn0470

Cinnamyl alcohol dehydrogenase

15

0

0

23.1

0

0

0.000000

cn0491

Zinc finger protein

7

0

0

10.8

0

0

0.000938

cn0519

Plastidic aspartate aminotransferase

10

0

0

15.4

0

0

0.000047

cn0544

Glutathione S-transferase parA Auxin-regulated protein parA STR246C protein

7

0

0

10.8

0

0

0.000938

cn0554

Cationic amino acid transporter

7

0

0

10.8

0

0

0.000938

cn0664

Cinnamyl alcohol dehydrogenase

14

0

0

21.5

0

0

0.000001

cn0683

No significant similarity

13

0

0

19.1

0

0

0.000002

cn1053

Cinnamyl alcohol dehydrogenase

10

0

0

15.4

0

0

0.000047

cn1054

Putative cinnamyl alcohol dehydrogenase

31

0

1

47.7

0

1.2

0.000000

cn1058

No significant similarity

10

0

1

15.4

0

1.2

0.000642

cn1406

Mitogen-activated protein kinase

10

2

0

15.4

7.4

0

0.000251

cn2133

No significant similarity

20

1

3

30.8

3.7

3.6

0.000018

cn2138

Pathogenesis-related protein 4

18

2

2

27.7

7.4

2.4

0.000048

cn2303

Endo-1,3;1,4-beta-D-glucanase

29

5

6

44.6

18.4

7.2

0.000009

cn2481

Eukaryotic translation initiation factor 2B, subunit 3

13

0

2

19.1

0

2.4

0.000195

cn2648

No significant similarity

20

0

16

30.8

0

19.1

0.000861

cn2929

No significant similarity

8

0

0

12.3

0

0

0.000346

cn2935

Beta-1, 3-glucanase

16

1

1

24.6

3.7

1.2

0.000019

cn2950

No significant similarity

12

1

0

18.5

3.7

0

0.000034

cn3069

Metallothionein-like protein

83

14

20

127.7

51.5

23.9

0.000000

cn3215

Unknown protein

21

0

4

32.3

0

4.8

0.000003

cn1535

PVR3-like protein

0

14

29

0

51.5

34.6

0.000000

cn2100

Dehydrin-like protein

0

6

15

0

22.1

17.9

0.000057

cn2856

Non-specific lipid transfer protein-C

0

9

1

0

33.1

1.2

0.000001

cn2943

1-Cys peroxiredoxin

2

6

23

3.1

22.1

27.4

0.000314

cn3268

Hypothetical protein

5

23

25

7.7

84.7

29.8

0.000000

cn1673

Defensin EGAD1

0

2

20

0

7.4

23.9

0.000007

cn2330

No significant similarity

1

1

19

1.5

3.7

22.7

0.000127

cn2447

No significant similarity

0

0

16

0

0

19.1

0.000007

cn2473

Basic protein 1A, WBP1A lipid transfer protein homolog

0

6

44

0

22.1

52.5

0.000000

cn2503

Extensin-like protein

0

2

16

0

7.4

19.1

0.000089

cn2506

Unknown protein

1

3

37

1.5

11

44.1

0.000000

cn2617

TPA: class III peroxidase 138 precursor

0

0

10

0

0

11.9

0.000600

cn2631

Reductase 1

0

0

10

0

0

11.9

0.000600

cn2684

Proline-rich SAC51

0

1

14

0

3.7

16.7

0.000188

cn2843

Mannoseglucose-specific lectin

0

2

15

0

7.4

17.9

0.000165

cn2850

ATP synthase beta subunit

2

0

22

3.1

0

26.2

0.000011

cn2901

Histone H3

0

1

12

0

3.7

14.3

0.000713

cn2980

Pescadillo-like protein

0

0

13

0

0

15.5

0.000065

cn3157

Catalase 2

0

1

43

0

3.7

51.3

0.000000

cn3238

Sucrose-synthase 21

0

0

23

0

0

27.4

0.000000

cn3239

Mannose-binding lectin Precursor

0

0

10

0

0

11.9

0.000600

cn3240

Mannose-binding lectin precursor

0

0

13

0

0

15.5

0.000065

  1. a Putative identity was assigned based on BLAST analysis results. No significant similarity represents sequences that do have any similarity to sequences in GenBank at an E-value threshold of 10-10.
  2. b Numbers in bold indicate higher expression observed in the specific tissues.