Table 1 Taxa included in phylogenetic analysis with GenBank accession numbers and references.
Taxon | GenBank accession number | Reference |
|---|---|---|
Gymnosperms (outgroup) | ||
Ginkgo biloba | DQ069337–DQ069702 | Leebens-Mack et al., 2005 [54] |
Pinus thunbergii | NC_001631 | Wakasugi et al., 1994 [66] |
Basal Angiosperms | ||
Amborella trichopoda | NC_005086 | Goremykin et al., 2003a [67] |
Chloranthus spicatus | NC_009598 | Hansen et al., 2007 [9] |
Illicium oligandrum | NC_009600 | Hansen et al., 2007 [9] |
Nuphar advena | NC_008788 | Raubeson et al. 2007 [27] |
Nymphaea alba | NC_006050 | Goremykin et al., 2004 [68] |
Magnoliids | ||
Calycanthus floridus | NC_004993 | Goremykin et al., 2003b [69] |
Drimys granadensis | NC_008456 | Cai et al., 2006 [47] |
Liriodendron tulipifera | NC_008326 | Cai et al., 2006 [47] |
Piper cenocladum | NC_008457 | Cai et al., 2006 [47] |
Monocots | ||
Acorus calamus | NC_007407 | Goremykin et al., 2005 [70] |
Dioscorea elephantipes | NC_009601 | Hansen et al., 2007 [9] |
Lemna minor | DQ400350 | Mardanov et al. 2008 [39] |
Oryza sativa | NC_001320 | Hiratsuka et al., 1989 [63] |
Phalaenopsis aphrodite | NC_007499 | Chang et al., 2006 [71] |
Typha latifolia | DQ069337–DQ069702 | Leebens-Mack et al., 2005 [54] |
Yucca schidigera | DQ069337–DQ069702 | Leebens-Mack et al., 2005 [54] |
Zea mays | NC_001666 | Maier et al., 1995 [65] |
Eudicots | ||
Arabidopsis thaliana | NC_000932 | Sato et al., 1999 [72] |
Atropa belladonna | NC_004561 | Schmitz-Linneweber et al., 2002 [73] |
Buxus microphylla | NC_009599 | Hansen et al., 2007 [9] |
Citrus sinensis | NC_008334 | Bausher et al., 2006 [56] |
Coffea Arabica | NC_008535 | Nalapalli et al., 2007 [74] |
Cucumis sativus | DQ119058 | Kim et al., 2006 [75] |
Daucus carota | NC_008325 | Ruhlman et al., 2006 [57] |
Eucaliptus globulus | NC_008115 | Steane, 2005 [76] |
Fagopyrum esculentum | EU254477 | this study |
Glycine max | NC_007942 | Saski et al., 2005 [77] |
Gossypium hirsutum | NC_007944 | Lee et al., 2006 [78] |
Helianthus annuus | NC_007977 | Timme et al., 2007 [79] |
Jasminum nudiflorum | NC_008407 | Lee et al., 2007 [40] |
Lactuca sativa | NC_007578 | Kanamoto et al., unpublished |
Lotus japonicus | NC_002694 | Kato et al., 2000 [80] |
Morus indica | NC_008359 | Ravi et al., 2006 [53] |
Nandina domestica | NC_008336 | Moore et al., 2006 [81] |
Nicotiana tabacum | NC_001879 | Shinozaki et al., 1986 [82] |
Oenothera elata | NC_002693 | Hupfer et al., 2000 [83] |
Panax ginseng | NC_006290 | Kim, Lee, 2004 [84] |
Platanus occidentalis | NC_008335 | Moore et al., 2006 [81] |
Populus alba | NC_008235 | Okumura et al., 2006 [85] |
Ranunculus macranthus | NC_008796 | Raubeson et al., 2007 [27] |
Spinacia oleracea | NC_002202 | Schmitz-Linneweber et al., 2001 [32] |
Vitis vinifera | NC_007957 | Jansen et al., 2006 [55] |