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Table 1 Taxa included in phylogenetic analysis with GenBank accession numbers and references.

From: Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp. ancestrale– A wild ancestor of cultivated buckwheat

Taxon GenBank accession number Reference
Gymnosperms (outgroup)
Ginkgo biloba DQ069337–DQ069702 Leebens-Mack et al., 2005 [54]
Pinus thunbergii NC_001631 Wakasugi et al., 1994 [66]
Basal Angiosperms
Amborella trichopoda NC_005086 Goremykin et al., 2003a [67]
Chloranthus spicatus NC_009598 Hansen et al., 2007 [9]
Illicium oligandrum NC_009600 Hansen et al., 2007 [9]
Nuphar advena NC_008788 Raubeson et al. 2007 [27]
Nymphaea alba NC_006050 Goremykin et al., 2004 [68]
Magnoliids
Calycanthus floridus NC_004993 Goremykin et al., 2003b [69]
Drimys granadensis NC_008456 Cai et al., 2006 [47]
Liriodendron tulipifera NC_008326 Cai et al., 2006 [47]
Piper cenocladum NC_008457 Cai et al., 2006 [47]
Monocots
Acorus calamus NC_007407 Goremykin et al., 2005 [70]
Dioscorea elephantipes NC_009601 Hansen et al., 2007 [9]
Lemna minor DQ400350 Mardanov et al. 2008 [39]
Oryza sativa NC_001320 Hiratsuka et al., 1989 [63]
Phalaenopsis aphrodite NC_007499 Chang et al., 2006 [71]
Typha latifolia DQ069337–DQ069702 Leebens-Mack et al., 2005 [54]
Yucca schidigera DQ069337–DQ069702 Leebens-Mack et al., 2005 [54]
Zea mays NC_001666 Maier et al., 1995 [65]
Eudicots
Arabidopsis thaliana NC_000932 Sato et al., 1999 [72]
Atropa belladonna NC_004561 Schmitz-Linneweber et al., 2002 [73]
Buxus microphylla NC_009599 Hansen et al., 2007 [9]
Citrus sinensis NC_008334 Bausher et al., 2006 [56]
Coffea Arabica NC_008535 Nalapalli et al., 2007 [74]
Cucumis sativus DQ119058 Kim et al., 2006 [75]
Daucus carota NC_008325 Ruhlman et al., 2006 [57]
Eucaliptus globulus NC_008115 Steane, 2005 [76]
Fagopyrum esculentum EU254477 this study
Glycine max NC_007942 Saski et al., 2005 [77]
Gossypium hirsutum NC_007944 Lee et al., 2006 [78]
Helianthus annuus NC_007977 Timme et al., 2007 [79]
Jasminum nudiflorum NC_008407 Lee et al., 2007 [40]
Lactuca sativa NC_007578 Kanamoto et al., unpublished
Lotus japonicus NC_002694 Kato et al., 2000 [80]
Morus indica NC_008359 Ravi et al., 2006 [53]
Nandina domestica NC_008336 Moore et al., 2006 [81]
Nicotiana tabacum NC_001879 Shinozaki et al., 1986 [82]
Oenothera elata NC_002693 Hupfer et al., 2000 [83]
Panax ginseng NC_006290 Kim, Lee, 2004 [84]
Platanus occidentalis NC_008335 Moore et al., 2006 [81]
Populus alba NC_008235 Okumura et al., 2006 [85]
Ranunculus macranthus NC_008796 Raubeson et al., 2007 [27]
Spinacia oleracea NC_002202 Schmitz-Linneweber et al., 2001 [32]
Vitis vinifera NC_007957 Jansen et al., 2006 [55]