Comparative expression profiling in grape (Vitis vinifera) berries derived from frequency analysis of ESTs and MPSS signatures

Table 9 Most highly expressed grape EST contigs from non-vinifera libraries based on MPSS signature abundance.

Contig ID	Signature abundance^a	Species	BlastX definition
CB518189	17310	Vci × Vru	AF141899_1 putative aquaporin PIP1–3 [Vitis berlandieri × Vitis rupestris]
CF205324	13748	Vru × Var	polyubiquitin [Elaeagnus umbellata]
CB288827	10450	Vae	expressed protein [Arabidopsis thaliana]
CF203205	5994	Vru × Var	GTXA_TOBAC PROBABLE GLUTATHIONE S-TRANSFERASE PARA (AUXIN-REGULATED PROTEIN PARA) (STR246C PROTEIN)
CB518203	4688	Vci × Vru	ADP-ribosylation factor [Arabidopsis thaliana]
CB518174	4668	Vci × Vru	TCTP_ORYSA Translationally controlled tumor protein homolog (TCTP)
CB518217	4642	Vci × Vru	MT1_CASGL Metallothionein-like protein 1 (MT-1)
CF206203	4208	Vru × Var	AF281656_1 putative transcription factor [Vitis vinifera]
CF202582	3036	Vru × Var	No hit
CF568957	2435	Vsh	T09838 chlorophyll a/b binding protein precursor – upland cotton chloroplast
CF204795	2164	Vru × Var	phase-change related protein [Quercus robur]
CF568866	2055	Vsh	DNJH_CUCSA DnaJ protein homolog (DNAJ-1)
CB518164	1726	Vci × Vru	AF121261_1 elongation factor 1-alpha 1; EF-1-alpha1 [Lilium longiflorum]
CF568912, CF568996	1354	Vsh	RBS_FAGCR Ribulose bisphosphate carboxylase small chain, chloroplast precursor (RuBisCO small subunit)
CB518167	913	Vci × Vru	60S ribosomal protein L26 (RPL26A) [Arabidopsis thaliana]
CB289025	866	Vae	seed specific protein Bn15D1B [Brassica napus]
CB602249	846	Vae	No hit
CB289590	802	Vae	60S ribosomal protein L27a [Panax ginseng]
CB288422	779	Vae	60S ribosomal protein L19 (RPL19B) [Arabidopsis thaliana]
CB518201	714	Vci × Vru	ARF_ORYSA ADP-ribosylation factor

^a The sum of abundance of matching 17-base MPSS signatures from the grape library.
^b Species abbreviations are as follows: Vae = Vitis aestivalis; Vru × Var = D8909-15 (Vitis rupestris 'A. de Serres' × Vitis arizonica), Vci × Vru = Vitis cinerea × Vitis rupestris, Vsh = Vitis shutthelworthii.

ISSN: 1471-2229