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Table 7 Top 20 grape EST singletons based on MPSS signature abundance.

From: Comparative expression profiling in grape (Vitis vinifera) berries derived from frequency analysis of ESTs and MPSS signatures

Singleton IDs

Signature abundancea

ESTsb

ESTsc

Total ESTsd

BlastX definition [species of closest EST match]

CB346285, CB348203, CB349257, CB349340, CB350305, CB979523

108049

1

5

6

Albumin seed storage protein precursor [Juglans regia]

CB346171, CB347912, CB349205, CB349357

67435

 

4

4

11S globulin

CB347682

46226

 

1

1

Xyloglucan-specific fungal endoglucanase inhibitor protein precursor [Lycopersicon esculentum]

CB346916, CB347117, CB347160, CB347210, CB347916, CB348271, CB348487, CB348646, CB349834, CB976447

33100

1

9

10

NLTA_RICCO Nonspecific lipid-transfer protein A (NS-LTP A) (phospholipid transfer protein) (PLTP)

CB346008, CB348119, CB348425, CB348509, CB348553, CB349918

13927

 

6

6

Chitinases [Arabis fecunda, Glycine max, Vitis vinifera, Fragaria × ananassa, chic pea]

CB346025, CB976380

5234

1

1

2

Chitinase [Oryza sativa (indica cultivar-group)]

CB347884

4642

 

1

1

A34131 metallothionein I homolog – spotted monkey flower

CB348305

4208

 

1

1

AF281656_1 putative transcription factor [Vitis vinifera]

CB978988

2805

1

 

1

AF236127_1 catalase [Vitis vinifera]

CB347891

2746

 

1

1

IF52_NICPL Eukaryotic translation initiation factor 5A-2 (eIF-5A) (eIF-4D)

CB347634

2724

 

1

1

Hydroperoxide lyase [Nicotiana attenuata]

CB348030

2219

 

1

1

S49422 11S globulin seed storage protein – prince's feather

CB346850, CB350175

2084

 

2

2

2S albumin [Vitis vinifera and Helianthus annus]

CB977561

1726

1

 

1

AF121261_1 elongation factor 1-alpha 1; EF-1-alpha1 [Lilium longiflorum]

CB978160

1714

1

 

1

expressed protein [Arabidopsis thaliana]

CB977027

1343

1

 

1

No Hit

CB976255

1267

1

 

1

Expressed protein; protein id: At3g52500.1, supported by cDNA: [Arabidopsis thaliana]

CB346104, CB347550

1049

 

2

2

endochitinase

CB347847

983

 

1

1

S54157 extensin-like protein – cowpea (fragment)

CB347925, CB349273

942

 

2

2

S51942 prunin 2 precursor – almond (fragment)

  1. a The sum of abundance of matching 17-base MPSS signatures (reliable and significant) from the grape library.
  2. b ESTs derived from stage II green, hard berries
  3. c ESTs derived from stage II green, soft berries
  4. d Total signatures matching contigs present in the UC Davis berry stage II libraries.
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BMC Plant Biology

ISSN: 1471-2229

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