Table 5 Individual and cumulative probability of identity (PI) estimates calculated for the new polymorphic SSR markers for the tested elite arabica and robusta genotypes
C. arabica | C. canephora | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Sib-based estimates for PI | Unbiased estimates for PI | Sib-based estimates for PI | Unbiased estimates for PI | ||||||||
Marker | Individual | Cumulative | Marker | Individual | Cumulative | Marker | Individual | Cumulative | Marker | Individual | Cumulative |
CaM38 | 3.64 × 10-1 | 3.64 × 10-1 | CaM03 | 9.67 × 10-4 | 9.67 × 10-4 | CaM36 | 3.37 × 10-1 | 3.37 × 10-1 | CaM40 | 2.47 × 10-3 | 2.47 × 10-3 |
CaM36 | 3.82 × 10-1 | 1.39 × 10-1 | CaM41 | 5.80 × 10-3 | 5.61 × 10-6 | CaM40 | 3.46 × 10-1 | 1.17 × 10-1 | CaM36 | 3.12 × 10-3 | 7.69 × 10-6 |
CaM40 | 4.07 × 10-1 | 5.66 × 10-2 | CaM38 | 1.36 × 10-2 | 7.65 × 10-8 | CaM03 | 3.54 × 10-1 | 4.13 × 10-2 | CaM33 | 3.15 × 10-3 | 2.42 × 10-8 |
CaM03 | 4.33 × 10-1 | 2.45 × 10-2 | CaM36 | 1.36 × 10-2 | 1.70 × 10-9 | CaM33 | 3.56 × 10-1 | 1.47 × 10-2 | CaM03 | 9.15 × 10-3 | 2.22 × 10-10 |
CaM41 | 4.69 × 10-1 | 1.15 × 10-2 | CaM40 | 1.36 × 10-2 | 4.88 × 10-11 | CaM22 | 3.70 × 10-1 | 5.44 × 10-3 | CaM22 | 1.58 × 10-2 | 3.50 × 10-12 |
CaM32 | 4.73 × 10-1 | 5.44 × 10-3 | CaM25 | 1.14 × 10-1 | 5.55 × 10-12 | CaM55 | 3.74 × 10-1 | 2.04 × 10-3 | CaM55 | 1.64 × 10-2 | 5.75 × 10-14 |
CaM46 | 4.73 × 10-1 | 2.57 × 10-3 | CaM32 | 1.20 × 10-1 | 6.64 × 10-13 | CaM46 | 3.90 × 10-1 | 7.94 × 10-4 | CaM46 | 2.25 × 10-2 | 1.29 × 10-15 |
CaM49 | 4.87 × 10-1 | 1.25 × 10-3 | CaM46 | 1.20 × 10-1 | 7.94 × 10-14 | CaM41 | 3.96 × 10-1 | 3.13 × 10-4 | CaM38 | 2.38 × 10-2 | 3.08 × 10-17 |
CaM25 | 5.77 × 10-1 | 7.23 × 10-4 | CaM49 | 1.56 × 10-1 | 1.24 × 10-14 | CaM26 | 4.00 × 10-1 | 1.26 × 10-4 | CaM26 | 2.86 × 10-2 | 8.79 × 10-19 |
CaM16 | 5.93 × 10-1 | 4.28 × 10-4 | CaM16 | 1.73 × 10-1 | 2.14 × 10-15 | CaM18 | 4.06 × 10-1 | 5.10 × 10-5 | CaM57 | 3.05 × 10-2 | 2.68 × 10-20 |
CaM17 | 5.99 × 10-1 | 2.56 × 10-4 | CaM26 | 2.14 × 10-1 | 4.59 × 10-16 | CaM38 | 4.09 × 10-1 | 2.09 × 10-5 | CaM18 | 3.74 × 10-2 | 1.00 × 10-21 |
CaM24 | 6.14 × 10-1 | 1.57 × 10-4 | CaM45 | 2.49 × 10-1 | 1.14 × 10-16 | CaM57 | 4.20 × 10-1 | 8.77 × 10-6 | CaM41 | 3.95 × 10-2 | 3.97 × 10-23 |
CaM42 | 6.14 × 10-1 | 9.65 × 10-5 | CaM27 | 3.13 × 10-1 | 3.58 × 10-17 | CaM49 | 4.34 × 10-1 | 3.18 × 10-6 | CaM32 | 4.21 × 10-2 | 1.67 × 10-24 |
CaM20 | 6.04 × 10-1 | 6.17 × 10-5 | CaM33 | 3.13 × 10-1 | 1.12 × 10-17 | CaM16 | 4.41 × 10-1 | 1.68 × 10-6 | CaM24 | 6.02 × 10-2 | 1.01 × 10-25 |
CaM26 | 6.44 × 10-1 | 3.97 × 10-5 | CaM20 | 3.49 × 10-1 | 3.92 × 10-18 | CaM32 | 4.52 × 10-1 | 7.57 × 10-7 | CaM45 | 6.92 × 10-2 | 6.96 × 10-27 |
CaM45 | 6.52 × 10-1 | 2.59 × 10-5 | CaM24 | 3.57 × 10-1 | 1.40 × 10-18 | CaM24 | 4.59 × 10-1 | 3.47 × 10-7 | CaM49 | 8.67 × 10-2 | 6.03 × 10-28 |
CaM27 | 7.12 × 10-1 | 1.85 × 10-5 | CaM42 | 3.57 × 10-1 | 5.00 × 10-19 | CaM35 | 4.71 × 10-1 | 1.64 × 10-7 | CaM35 | 8.74 × 10-2 | 5.27 × 10-29 |
CaM33 | 7.12 × 10-1 | 1.31 × 10-5 | CaM17 | 3.67 × 10-1 | 1.84 × 10-19 | CaM59 | 4.75 × 10-1 | 7.77 × 10-8 | CaM16 | 9.19 × 10-2 | 4.84 × 10-30 |
CaM13 | 7.99 × 10-1 | 1.05 × 10-5 | CaM13 | 5.00 × 10-1 | 9.18 × 10-20 | CaM02 | 4.79 × 10-1 | 3.72 × 10-8 | CaM31 | 9.46 × 10-2 | 4.58 × 10-31 |
CaM44 | 7.99 × 10-1 | 8.39 × 10-6 | CaM44 | 5.00 × 10-1 | 4.59 × 10-20 | CaM27 | 4.87 × 10-1 | 1.81 × 10-8 | CaM21 | 9.90 × 10-2 | 4.54 × 10-32 |
CaM52 | 7.99 × 10-1 | 6.71 × 10-6 | CaM52 | 5.00 × 10-1 | 2.30 × 10-20 | CaM21 | 5.03 × 10-1 | 9.10 × 10-9 | CaM59 | 1.41 × 10-1 | 6.40 × 10-33 |
CaM30 | 8.88 × 10-1 | 5.95 × 10-6 | CaM30 | 6.89 × 10-1 | 1.58 × 10-20 | CaM12 | 5.03 × 10-1 | 4.58 × 10-9 | CaM02 | 1.48 × 10-1 | 9.46 × 10-34 |
CaM59 | 8.88 × 10-1 | 5.29 × 10-6 | CaM59 | 6.89 × 10-1 | 1.09 × 10-20 | CaM43 | 5.08 × 10-1 | 2.33 × 10-9 | CaM27 | 1.56 × 10-1 | 1.47 × 10-34 |
CaM02 |    DL | CaM45 | 5.26 × 10-1 | 1.22 × 10-9 | CaM43 | 1.63 × 10-1 | 2.40 × 10-35 | ||||
CaM06 |    DL | CaM31 | 5.33 × 10-1 | 6.53 × 10-10 | CaM12 | 1.68 × 10-1 | 4.05 × 10-36 | ||||
CaM15 |    DL | CaM39 | 5.47 × 10-1 | 3.57 × 10-10 | CaM25 | 1.73 × 10-1 | 7.02 × 10-37 | ||||
CaM18 |    DL | CaM25 | 5.93 × 10-1 | 2.12 × 10-10 | CaM08 | 2.49 × 10-1 | 1.75 × 10-37 | ||||
CaM21 |    DL | CaM06 | 5.94 × 10-1 | 1.26 × 10-10 | CaM09 | 2.49 × 10-1 | 4.36 × 10-38 | ||||
CaM31 |    DL | CaM42 | 5.94 × 10-1 | 7.46 × 10-11 | CaM20 | 2.49 × 10-1 | 1.09 × 10-38 | ||||
CaM34 |    DL | CaM58 | 6.14 × 10-1 | 4.58 × 10-11 | CaM39 | 2.55 × 10-1 | 2.78 × 10-39 | ||||
CaM35 |    DL | CaM17 | 6.40 × 10-1 | 2.93 × 10-11 | CaM52 | 3.13 × 10-1 | 8.69 × 10-40 | ||||
CaM39 |    DL | CaM30 | 6.40 × 10-1 | 1.87 × 10-11 | CaM17 | 3.49 × 10-1 | 3.04 × 10-40 | ||||
CaM43 |    DL | CaM08 | 6.52 × 10-1 | 1.22 × 10-11 | CaM30 | 3.49 × 10-1 | 1.06 × 10-40 | ||||
CaM55 |    DL | CaM09 | 6.52 × 10-1 | 7.97 × 10-12 | CaM54 | 3.50 × 10-1 | 3.71 × 10-41 | ||||
CaM57 |    DL | CaM20 | 6.52 × 10-1 | 5.20 × 10-12 | CaM58 | 3.57 × 10-1 | 1.33 × 10-41' | ||||
CaM58 |    DL | CaM54 | 6.54 × 10-1 | 3.40 × 10-12 | CaM06 | 3.71 × 10-1 | 4.92 × 10-42 | ||||
CaM08 |    MM | CaM52 | 7.12 × 10-1 | 2.42 × 10-12 | CaM42 | 3.71 × 10-1 | 1.83 × 10-42 | ||||
CaM09 |    MM | CaM53 | 7.89 × 10-1 | 1.91 × 10-12 | CaM53 | 4.49 × 10-1 | 8.21 × 10-43 | ||||
CaM11 |    MM | CaM34 | 7.99 × 10-1 | 1.53 × 10-12 | CaM34 | 5.00 × 10-1 | 4.10 × 10-43 | ||||
CaM12 |    MM | CaM44 | 7.99 × 10-1 | 1.22 × 10-12 | CaM44 | 5.00 × 10-1 | 2.05 × 10-43 | ||||
CaM22 |    MM | CaM11 |    MM | ||||||||
CaM23 |    MM | CaM13 |    MM | ||||||||
CaM53 |    MM | CaM15 |    MM | ||||||||
CaM54 |    MM | CaM23 |    MM | ||||||||
Mean | 6.09 × 10-1 | -- |  | 2.67 × 10-1 | -- |  | 5.19 × 10-1 | -- |  | 1.68 × 10-1 | -- |
SD (+) | 1.57 × 10-1 | -- |  | 2.10 × 10-1 | -- |  | 1.30 × 10-1 | -- |  | 1.52 × 10-1 | -- |
SE (+) | 3.36 × 10-2 | -- |  | 4.47 × 10-2 | -- |  | 1.99 × 10-2 | -- |  | 2.32 × 10-2 | -- |