Skip to main content

Table 5 Individual and cumulative probability of identity (PI) estimates calculated for the new polymorphic SSR markers for the tested elite arabica and robusta genotypes

From: Development of new genomic microsatellite markers from robusta coffee (Coffea canephoraPierre ex A. Froehner) showing broad cross-species transferability and utility in genetic studies

C. arabica C. canephora
Sib-based estimates for PI Unbiased estimates for PI Sib-based estimates for PI Unbiased estimates for PI
Marker Individual Cumulative Marker Individual Cumulative Marker Individual Cumulative Marker Individual Cumulative
CaM38 3.64 × 10-1 3.64 × 10-1 CaM03 9.67 × 10-4 9.67 × 10-4 CaM36 3.37 × 10-1 3.37 × 10-1 CaM40 2.47 × 10-3 2.47 × 10-3
CaM36 3.82 × 10-1 1.39 × 10-1 CaM41 5.80 × 10-3 5.61 × 10-6 CaM40 3.46 × 10-1 1.17 × 10-1 CaM36 3.12 × 10-3 7.69 × 10-6
CaM40 4.07 × 10-1 5.66 × 10-2 CaM38 1.36 × 10-2 7.65 × 10-8 CaM03 3.54 × 10-1 4.13 × 10-2 CaM33 3.15 × 10-3 2.42 × 10-8
CaM03 4.33 × 10-1 2.45 × 10-2 CaM36 1.36 × 10-2 1.70 × 10-9 CaM33 3.56 × 10-1 1.47 × 10-2 CaM03 9.15 × 10-3 2.22 × 10-10
CaM41 4.69 × 10-1 1.15 × 10-2 CaM40 1.36 × 10-2 4.88 × 10-11 CaM22 3.70 × 10-1 5.44 × 10-3 CaM22 1.58 × 10-2 3.50 × 10-12
CaM32 4.73 × 10-1 5.44 × 10-3 CaM25 1.14 × 10-1 5.55 × 10-12 CaM55 3.74 × 10-1 2.04 × 10-3 CaM55 1.64 × 10-2 5.75 × 10-14
CaM46 4.73 × 10-1 2.57 × 10-3 CaM32 1.20 × 10-1 6.64 × 10-13 CaM46 3.90 × 10-1 7.94 × 10-4 CaM46 2.25 × 10-2 1.29 × 10-15
CaM49 4.87 × 10-1 1.25 × 10-3 CaM46 1.20 × 10-1 7.94 × 10-14 CaM41 3.96 × 10-1 3.13 × 10-4 CaM38 2.38 × 10-2 3.08 × 10-17
CaM25 5.77 × 10-1 7.23 × 10-4 CaM49 1.56 × 10-1 1.24 × 10-14 CaM26 4.00 × 10-1 1.26 × 10-4 CaM26 2.86 × 10-2 8.79 × 10-19
CaM16 5.93 × 10-1 4.28 × 10-4 CaM16 1.73 × 10-1 2.14 × 10-15 CaM18 4.06 × 10-1 5.10 × 10-5 CaM57 3.05 × 10-2 2.68 × 10-20
CaM17 5.99 × 10-1 2.56 × 10-4 CaM26 2.14 × 10-1 4.59 × 10-16 CaM38 4.09 × 10-1 2.09 × 10-5 CaM18 3.74 × 10-2 1.00 × 10-21
CaM24 6.14 × 10-1 1.57 × 10-4 CaM45 2.49 × 10-1 1.14 × 10-16 CaM57 4.20 × 10-1 8.77 × 10-6 CaM41 3.95 × 10-2 3.97 × 10-23
CaM42 6.14 × 10-1 9.65 × 10-5 CaM27 3.13 × 10-1 3.58 × 10-17 CaM49 4.34 × 10-1 3.18 × 10-6 CaM32 4.21 × 10-2 1.67 × 10-24
CaM20 6.04 × 10-1 6.17 × 10-5 CaM33 3.13 × 10-1 1.12 × 10-17 CaM16 4.41 × 10-1 1.68 × 10-6 CaM24 6.02 × 10-2 1.01 × 10-25
CaM26 6.44 × 10-1 3.97 × 10-5 CaM20 3.49 × 10-1 3.92 × 10-18 CaM32 4.52 × 10-1 7.57 × 10-7 CaM45 6.92 × 10-2 6.96 × 10-27
CaM45 6.52 × 10-1 2.59 × 10-5 CaM24 3.57 × 10-1 1.40 × 10-18 CaM24 4.59 × 10-1 3.47 × 10-7 CaM49 8.67 × 10-2 6.03 × 10-28
CaM27 7.12 × 10-1 1.85 × 10-5 CaM42 3.57 × 10-1 5.00 × 10-19 CaM35 4.71 × 10-1 1.64 × 10-7 CaM35 8.74 × 10-2 5.27 × 10-29
CaM33 7.12 × 10-1 1.31 × 10-5 CaM17 3.67 × 10-1 1.84 × 10-19 CaM59 4.75 × 10-1 7.77 × 10-8 CaM16 9.19 × 10-2 4.84 × 10-30
CaM13 7.99 × 10-1 1.05 × 10-5 CaM13 5.00 × 10-1 9.18 × 10-20 CaM02 4.79 × 10-1 3.72 × 10-8 CaM31 9.46 × 10-2 4.58 × 10-31
CaM44 7.99 × 10-1 8.39 × 10-6 CaM44 5.00 × 10-1 4.59 × 10-20 CaM27 4.87 × 10-1 1.81 × 10-8 CaM21 9.90 × 10-2 4.54 × 10-32
CaM52 7.99 × 10-1 6.71 × 10-6 CaM52 5.00 × 10-1 2.30 × 10-20 CaM21 5.03 × 10-1 9.10 × 10-9 CaM59 1.41 × 10-1 6.40 × 10-33
CaM30 8.88 × 10-1 5.95 × 10-6 CaM30 6.89 × 10-1 1.58 × 10-20 CaM12 5.03 × 10-1 4.58 × 10-9 CaM02 1.48 × 10-1 9.46 × 10-34
CaM59 8.88 × 10-1 5.29 × 10-6 CaM59 6.89 × 10-1 1.09 × 10-20 CaM43 5.08 × 10-1 2.33 × 10-9 CaM27 1.56 × 10-1 1.47 × 10-34
CaM02    DL CaM45 5.26 × 10-1 1.22 × 10-9 CaM43 1.63 × 10-1 2.40 × 10-35
CaM06    DL CaM31 5.33 × 10-1 6.53 × 10-10 CaM12 1.68 × 10-1 4.05 × 10-36
CaM15    DL CaM39 5.47 × 10-1 3.57 × 10-10 CaM25 1.73 × 10-1 7.02 × 10-37
CaM18    DL CaM25 5.93 × 10-1 2.12 × 10-10 CaM08 2.49 × 10-1 1.75 × 10-37
CaM21    DL CaM06 5.94 × 10-1 1.26 × 10-10 CaM09 2.49 × 10-1 4.36 × 10-38
CaM31    DL CaM42 5.94 × 10-1 7.46 × 10-11 CaM20 2.49 × 10-1 1.09 × 10-38
CaM34    DL CaM58 6.14 × 10-1 4.58 × 10-11 CaM39 2.55 × 10-1 2.78 × 10-39
CaM35    DL CaM17 6.40 × 10-1 2.93 × 10-11 CaM52 3.13 × 10-1 8.69 × 10-40
CaM39    DL CaM30 6.40 × 10-1 1.87 × 10-11 CaM17 3.49 × 10-1 3.04 × 10-40
CaM43    DL CaM08 6.52 × 10-1 1.22 × 10-11 CaM30 3.49 × 10-1 1.06 × 10-40
CaM55    DL CaM09 6.52 × 10-1 7.97 × 10-12 CaM54 3.50 × 10-1 3.71 × 10-41
CaM57    DL CaM20 6.52 × 10-1 5.20 × 10-12 CaM58 3.57 × 10-1 1.33 × 10-41'
CaM58    DL CaM54 6.54 × 10-1 3.40 × 10-12 CaM06 3.71 × 10-1 4.92 × 10-42
CaM08    MM CaM52 7.12 × 10-1 2.42 × 10-12 CaM42 3.71 × 10-1 1.83 × 10-42
CaM09    MM CaM53 7.89 × 10-1 1.91 × 10-12 CaM53 4.49 × 10-1 8.21 × 10-43
CaM11    MM CaM34 7.99 × 10-1 1.53 × 10-12 CaM34 5.00 × 10-1 4.10 × 10-43
CaM12    MM CaM44 7.99 × 10-1 1.22 × 10-12 CaM44 5.00 × 10-1 2.05 × 10-43
CaM22    MM CaM11    MM
CaM23    MM CaM13    MM
CaM53    MM CaM15    MM
CaM54    MM CaM23    MM
Mean 6.09 × 10-1 --   2.67 × 10-1 --   5.19 × 10-1 --   1.68 × 10-1 --
SD (+) 1.57 × 10-1 --   2.10 × 10-1 --   1.30 × 10-1 --   1.52 × 10-1 --
SE (+) 3.36 × 10-2 --   4.47 × 10-2 --   1.99 × 10-2 --   2.32 × 10-2 --
  1. Note: The markers are arranged as per their individual PI in the decreasing order; Cumulative power of discrimination was calculated using products of PIs of successive informative markers arranged in decreasing order as described by Waits et al. [56]. The PI was not estimated for DL and MM markers, as they were uninformative. DL: Duplicated loci; MM: Monomorphic markers.