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Table 3 Differences between monocot and dicot ABPs and NLPs. Differences between monocot and dicot ABPs and NLPs (shown in boldface).

From: Cupin: A candidate molecular structure for the Nep1-like protein family

 

2d-Structure and glycosylation sites ([nx(st)])

Protein

 

C62c89-coli

β-barrel

Type I NLP consensus

ααβαββ

Cβ

nts

L

Ck

β A

β B β C

ηβ D β E

H

β F

β G

v

β H

T

β I

αβ

α

PpAAK19753

αββαββ

nts

l

ck

β A

β B β C

ηβ D β E

h

β6β F

β G

v

β H

t

β I

αβ

α

MpNEPl

αααβ

nws

l

ck

β A

β B β C

ηβ D β E

h

β F

β G

v

β H

t

β I

α

α

Type II NLP consensus

αβαβ

Cβ

tln

l

Cr

β A C

B β C

ηβDβE

H

β6β F

β G

g

β H

A

β I

α

α

Dicot ABP

 

A"

nis α

l

β A ,r

β A α

β B β C

ηβDβE

h

β F nst

β G

v

β H

t

βIβJ

αβ

Monocot ABP

 

A"

dis α

m

β A ,i

β A α

β B β C

ηβ D β E

s

β F nst

β G

p

β H

s

βIβJ

αβ

  1. The dicot glycosylation site nis sequence is not present in the monocot sequences (dis). nts, nst and nws are possible NLP glycosylation sites.