Transcriptomic changes induced by acute ozone in resistant and sensitive Medicago truncatulaaccessions

Puckette, Michael C; Tang, Yuhong; Mahalingam, Ramamurthy

doi:10.1186/1471-2229-8-46

BMC Plant Biology

Table 1 Significant gene ontology categories of ozone-responsive genes in M truncatula determined by Cluster Enrichment analysis

From: Transcriptomic changes induced by acute ozone in resistant and sensitive Medicago truncatulaaccessions

Gene Ontology		JE154			Jemalong
	Cat.	1	6	12	1	6	12
Multidrug transport	P	+	+	+		+
Response to SA	P	+	+	+			-
Response to UV	P	+	+	+
Response to wounding	P	+	+	+		+/-
Response to JA	P	+	-	+		-	-
Defense Response	P	+		+
ATPase activity	F	+
Calcium ion binding	F	+
Calmodulin binding	F	+
Hydrolase activity	F	+
Kinase activity	F	+
Sugar porter activity	F	+
Transcriptional repressor	F	+
Vacoular membrane	C	+
Carboydrate metabolic process	P	-
Transferase activity	F	-
Translation initiation	P	-
ER	C		+	+		+
Response to oxidative stress	P		+	+		+	-
Cellulose and pectin containing cell wall	C		+	+
Ubiquitination	P		+
Chloroplast	C		-			-
Peptidyl-pro-isomerase activity	F		-			-
Photosynthesis	P		-			-	+
Response to light stimulus	P		-
Cytosol	C		+			+	-
Phenylpropanoid biosynthesis	P		+			+
Response to heat	P		+			+
Senescence	P		+			+
Copper ion binding	F		-			+
Toxin catabolism	P		-			+
AMP binding	F					+
Cell wall constituent	F					+
ESCRT III complex	C					+
Lignin biosynthesis	P					+
Peroxidase activity	F					+	-
Response to cold	P					+
Response to fungus	P					+
Response to salt stress	P					+
Response to virus	P					+
Peptidase activity	F			+		-
Response to light	P			+		-
Chlorophyll biosynthesis	P					-
Embryonic development	P					-
FK506 binding	F					-
GA mediated signaling	P					-
Glucan metabolic process	P					-
Lipoxygenase activity	F					-
Metal ion binding	F					-	+
Nutrient reservoir activity	F					-	-
Photorespiration	P					-
Starch biosynthesis	P					-
Flavonoid biosynthesis	P			+
Isoprenoid biosynthesis	P			+
JA biosynthesis	P			+
Oligopeptide transport	P			+
Protein folding	P			+
Sucrose biosynthesis	P			+
UDP-glycosyltransferase activity	F			+
Water deprivation	P			+
Glutathione transferase activity	F			-
Response to biotic stress	P			-
Ca ion binding	F						-
Chromosome organization	P						+
Development	P						-
Light harvesting complex	C						+
Protein myristoylation	P						-
Response to ethylene	P						-
Ubiquitin thiolesterase activity	F						+
Unfolded protein binding	F						-

1,6 and 12 refers to the time points in hours at which the GO's were determined to be significant by CLENCH program. Only those GOs that had 3 or more genes are listed in this table.
Abbreviations: Cat. – GO category; P – process; F – function; C – compartment; + indicates that the genes belonging to that GO category were up regulated and - indicates genes in that GO category were down regulated.

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ISSN: 1471-2229

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