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Table 4 Tandem repeat sequences in the Rps1-k region

From: The soybean-Phytophthora resistance locus Rps1-k encompasses coiled coil-nucleotide binding-leucine rich repeat-like genes and repetitive sequences

Position

Consensus sequence of tandem repeat unit

Copy number

4872–4907

TTAATAAATTTATT

2.6

5279–5311

TTTATT

2.5

7219–7253

TTTTATTATTTAAATAT

2

7328–7366

TTTTAAGTTAACATAAATT

2

13986–14041

CTTATATTTTTTTTAT

3.5

14069–14121

TTTAAATCTTTTATTTTTACC

2.5

28228–28272

TTTATTTATAAGATTATTTAAT

2

34767–34826

ATGCAAACATATATACATGC

2.9

65181–65235

TCATTACTAAAAAAAAATAG

2.8

65966–66017

GCCAGCATGCATGTATATC

2.7

70677–70718

TAAAAAGTTGAATAGATAC

2.2

72634–72694

CATTAAGTTCTTTTAATTCCTAGGTTAGTGG

2

75090–75128

CGTTCTTCAT

3.8

87791–87926

TGAATATATATAGCATGAAAATGCCTTGCAAAATA

3.9

89787–89849

AAATAGAAAAGGAAAGAAAATG

2.9

90350–90511

AAAAAGAAAAGAAAGGAAATTCCCAATCAAAGAGAAAGC

3.8

90381–90538

GAGAAAGCAAAAAGAAAAGAAAGGAAATTCCCAATCAAAGAGTGG

3.5

91333–92076

TACGCGGAGATACCTTACGGTTATCCGCACCCCCTTTGCCATTCAGACACAGTCGTGTCCGTTGGCAAGCAGAGACCAAGTTTGGTCATTCTGCACACATGA

7.3

92743–92779

GCTCGCCTGGGCGAGCTGA

1.9

98273–98333

CATTAAGTTCTTTCAATTCATAGGTTAGTGG

2

113516–113540

AAAAACCGTCTTA

1.9

120828–120857

TTTTTTTTTCC

2.7

122442–122512

ATCAAATAAAATGCTTGCAGATCA

3

124367–124513

AAAAAAAATTGAAGATTCTAAGACAGTTTTTAGGGAAAACCGTCTTAGAATGTCTTATTTTAAATAAAAAAAAATT

2

133966–134004

AATCAAAGAACAACTCAAGTG

1.9

134057–134089

TCAAGAA

4.9

135918–136076

GATCCACAAGGGATGTACCCTCCCTTATTCTCATTACAACAACCCAAGTAGATGTACCCTCCACT

2.3

136235–136365

AAGGGAGAAGAGAGACACAAAAAGAATTCAGGCGGTTAGTCCTTGTCGATTCTTTTTGGAA

2.2

137034–137101

TCTTCTCTTGAATCTTGAATTCAA

2.9

144892–144919

AGAAAAGGAAAAA

2

145379–147112

GGACTACACGTCCTCGCCTTCAGA

72

147479–147972

GGGATCGCGCCCACAAGACACCCAGTGGACCCGAAGGAGTCCAACAGGGCCCTGGGGTTTCCAGCTCTGGTTACGGGCCTCTGTCAGTCCTACAGGGTGCCCGTCCCCCCCAGCAAGGTCACCCCATCGTAACATAGGTAACTATGCACATCTCTCAACTGATTTCTGATGCCATCCAATATTTGCA

2.6

148467–148657

AAAAATACCTCACAAAATATATATATATTATGTTTAGGTAGCAAGATACCTTGGATACACATGTATATAGC

2.7

149273–149361

AAAGAAAGTTCCCGATCAAAGATCGAAAGAAAACAAAGAGAAAA

2

150401–150651

GTATGGTTATCAGCACCTGTCGTCAACCAGGGGCAAACGAGCCCGTTGACGCGCAGAGACTAACGTCATCTTCTGCACCTTTTGTCAACCAGAGACAGCGAGTCCAATGACATGTGGAGATACCCAAGCGATTATCC

1.8

150612–151127

GCACCTTTTGTCATCCAGAGACAGCGAGTCCGATGACATGCGAGGGTACCGTATGGTTATCC

8.3

150799–150931

CACCTTTCGTCAACCAGGGGCAAACGAGCCCATTGACGCGCAGAGACTAACGTCGTCTTCTG

2.1

150550–151365

GCACCTTTCGTCAACCAGGGGCAAGCGAGCCCGTTGACGCGCAGAGACTAACGTCGTCTTCTGCACCTTTTGTCAACCAGAGATAGCGAGTCCGATGACATGCGAGGGTAACGTATGGTTATCCGCACCTTTTTTCATCCAGAGACAGCGAGTCCGATGACATGCGGGGGTACCGTATGGTTATCCGCACCTTTTGTCATCCACAGACGGCAAGTCCGATGACACGCGGAGGTACCGTATGGTTATCCACACCTTTCGTCAACCAGGGGCAAACGAGCCCATTGACGCACAGAGACTAACGTCGTCTTCC

2.6

150536–151060

CCGTATGGTTATCACACCTTTCGTCAACCAGGGGCAAACGAGCCCATTGACGCGCAGAGACTAACGTCGTCTTCTGCACCTTTCGTCAACCAGAGAGAGCGAGCCCAATGAATGCGAGGCTAACGATCGTTATCCGCACCTTTTATCATCCAGAGACGGCTAGTCCGATGACATGCGGGGGTACCGTATGGTTATCCGCACCTTTTGTCATCCACAGACAGCAAGTCCGATAACACGCAGGGGTA

2.1

150901–151386

CGCAGAGACTAACGTCGTCTTCCGCACCTTTTGTCATCCAGAGATAGCGAGTCCGATGACATGCGGAGGTACCGTATGGTTATCCGCACCTTTTGTCAACCAGAGGCAAGCGAGTCCGTTGACA

3.9

151985–152116

AATCCGTAAAGTTTCGCAACATTCTGGAAGTCAAAACAAGTATTGCTGCAC

2.6

152550–152596

TTCTTCATCG

4.6

152558–152597

CGTTCTTCATCGTTCTTCGTT

1.9

153216–153398

CCAAGAGATCGTTAATGGTCCAACGCCTTAACGTTTCTCTCCTTTCAAAA

3.6

153555–153596

AAAAAAGACAAAAAACAT

2.3

156483–156603

ATCAAACATCACTTGAGATCGTTTCAAGGTCCAACGCCTTAACCATTCTCTCCGCTTTTC

2

161707–161856

ACATCTGAGAAGAAAACTCATTCGACCAGGAGCTCATGGAAAATTCCCAAAGACAATTGTGATAGTAGGGT

2.1

162626–162804

TTTTAGAGGACTCAAAGTCCTCACCTTTATC

5.8

163722–163780

ATCAAAGAACAACTCAAGTGA

2.9

163762–163815

GAATCAAGAACAAGTCAAGACTCAA

2.1

163765–163818

TCAAGAATCAAGAAGAAT

2.9

163826–163911

AATCAAG

12.3

164281–164330

TTCAAAAAGGTTTTAACTTT

2.5

164461–164485

TTGAATCTCT

2.5

166799–166839

AGTATTTTCAAAAAT

2.9

168846–168891

TCATAAATCATGCATAATATCCT

2

172682–172713

TTTTCTGCA

3.4

178161–178219

ATCAAAGAACAACTCAAGTGA

2.9

178201–178254

GAATCAAGAACAAGTCAAGACTCAA

2.1

178204–178257

TCAAGAATCAAGAAGAAT

2.9

178265–178343

AATCAAG

11.3

178713–178762

TTCAAAAAGGTTTTAACTTT

2.5

180693–180809

AAAGGCACGCTAAGCCCAATTCCAACCGAGAGGAAGTGCACTGAGCGGCCC

2.3

183350–183378

AATTTATGGAGCCA

2.1