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Table 3 Tall fescue HSP and heat shock transcription factor (HSF) gene expression

From: Analysis of tall fescue ESTs representing different abiotic stresses, tissue types and developmental stages

Unigene IDa DR1 DS1 FSS TFM HSS LF1 RT1 ST1 SD1 Annotation
           Low molecular weight (LMW) HSPs
TC3677 0 b 0 0 0 4 0 0 0 0 UP|HSP11_WHEAT (P12810) 16.9 kDa class I hsp
DT693759 0 0 0 0 2 0 0 0 0 PRF|1908439B|445140|1908439B hsp 16.9B. {O. sativa}
DT696482 0 0 0 0 0 2 0 0 0 UP|Q40866_PENAM (Q40866) hsp 17.0
TC739 0 0 0 0 8 0 0 0 0 UP|Q96458_HORVU (Q96458) 17 kDa class I small hsp
DT706802 0 0 0 0 0 0 0 2 0 PRF|NP_175807.1|17.4 kDa class III hsp {A.thaliana}
TC4040 48 0 0 0 2 0 0 0 0 UP|Q94KM0_WHEAT (Q94KM0) Small hsp HSP17.8
TC2206 0 0 0 0 2 0 2 2 0 UP|Q40867_PENAM (Q40867) hsp 17.9
TC2205 0 0 8 0 12 0 0 0 0 UP|Q8W007_ORYSA (Q8W007) Class I lmw-hsp 17.9
DT684410 0 0 8 0 0 0 0 0 0 UP|Q5R1P5_BOMMO (Q5R1P5) hsp21.4
TC2142 0 0 0 0 4 0 0 0 0 UP|O64960_MAIZE (O64960) lmw-hsp (HSP22)
TC1295 0 0 0 0 4 0 0 0 0 PIR|S65051|S65051 lmw-hsp (Hsp22.5) {G. max}
TC2141 0 0 0 0 28 0 0 0 0 UP|Q9ZP25_WHEAT (Q9ZP25) sm Hsp23.5 precursor
DT695134 0 0 0 0 2 0 0 0 0 UP|Q41568_WHEAT (Q41568)hsp 26.6B
TC2085 0 0 8 0 18 0 0 0 0 UP|Q8GV35_9POAL (Q8GV35) Chl lmw-hsp HSP26.7b
DT685446 0 0 8 0 0 0 0 0 0 UP|Q8GV37_9POAL (Q8GV37) Chl lmw-hsp HSP26.8
DT693763 0 0 0 0 2 0 0 0 0 UP|O80432_LYCES (O80432) Mitochondrial smhsp
TC4358 0 0 0 0 10 0 0 2 0 PDB|1GME_A|1GME_Eukaryotic smhsp {T. aestivum}
TC501 0 0 0 0 12 0 0 0 0 UP|Q40978_PAPSO (Q40978) lmw-hsp
DT695083 0 0 0 0 2 0 0 0 0 UP|Q41218_SOLTU (Q41218) smhsp homolog
DT684541 0 0 8 0 0 0 0 0 0 UP|Q4ZHH0_9BASI (Q4ZHH0) smhsp frag
DT713365 0 0 0 0 0 0 0 0 2 UP|Q58FS1_TRIHA (Q58FS1) smhsp
Unigene ID DR1 DS1 FSS TFM HSS LF1 RT1 ST1 SD1 Annotation
TC4794 0 0 0 0 4 0 0 0 0 UP|Q8L470_LYCES (Q8L470) smhsp
           HSP 70
DT679789 0 2 0 0 0 0 0 0 0 GB|CAA54419.1|450880|ATHSC701 hs cognate 70-1 {A. thaliana}
TC64 0 0 0 0 2 0 0 4 0 UP|HSP72_LYCES (P27322) hs cognate 70 kDa prot 2
DT691644 0 0 0 0 2 0 0 0 0 UP|HSP74_HUMAN (P34932) hs 70 kDa protein 4 (HSP70RY)
DT695482 0 0 0 0 2 0 0 0 0 UP|HSP7S_PEA (Q02028) Stromal 70 kDa hs-related protein
DT682340 0 2 0 0 0 0 0 0 0 UP|O50036_SPIOL (O50036) hs 70 protein
DT692072 0 0 0 0 2 0 0 0 0 UP|O04056_CITLA (O04056) hsp precursor
TC63 8 14 0 38 4 4 21 2 0 UP|Q84TA1_ORYSA (Q84TA1) hspgnate 70
           High molecular weight HSPs
DT692018 0 0 0 0 2 0 0 0 0 UP|Q9ZRG0_WHEAT (Q9ZRG0) hsp
TC149 0 0 0 4 2 4 2 2 0 UP|HSP82_ORYSA (P33126) hsp
TC5768 0 0 0 0 4 0 0 0 0 PIR|A48426|A48426 HSP82 – maize {Z. mays}
TC148 0 0 0 12 2 0 4 10 4 UP|Q7XJ80_HORVU (Q7XJ80) Cytosolic hsp 90
DT684503 0 0 8 0 0 0 0 0 0 UP|Q45XA1_BEMTA (Q45XA1) 90 kDa hsp
DT710057 0 0 0 0 0 0 0 2 0 UP|HS101_ORYSA (Q6F2Y7) hsp 101
DT697638 0 0 0 0 0 2 0 0 0 UP|Q6Z517_ORYSA 101 kDa hsp; HSP101-like
TC2500 0 0 0 0 2 0 0 0 8 UP|Q9LF37_ARATH (Q9LF37) ClpB hsp -like
TC950 0 0 0 2 0 0 0 0 4 UP|HS105_HUMAN (Q92598) hsp 105 kDa
           Unclassified HSPs
TC5675 0 0 0 0 0 0 0 0 4 UP|O23638_ARATH (O23638) hsp precursor
DT708187 0 0 0 0 0 0 0 2 0 UP|O49457_ARATH (O49457) hsp
TC3195 0 0 0 0 2 0 2 0 0 UP|P93437_ORYSA (P93437) hsp
TC2515 0 4 0 0 0 2 0 0 4 UP|Q43638_SECCE (Q43638) hsp
TC1929 0 0 0 0 4 0 0 0 0 UP|Q4LDR0_LYCES (Q4LDR0) hsp
Unigene ID DR1 DS1 FSS TFM HSS LF1 RT1 ST1 SD1 Annotation
TC4728 0 0 8 0 4 0 0 0 0 UP|Q5ZBN6_ORYSA (Q5ZBN6) hs-like protein
DT702768 0 0 0 0 0 0 2 0 0 UP|Q6ER93_ORYSA (Q6ER93) hsp -like
TC1335 0 0 0 2 0 0 2 0 0 UP|Q6K2F0_ORYSA (Q6K2F0) hsp -like
TC3822 0 0 0 0 0 0 2 2 0 UP|Q96269_ARATH (Q96269) hsp
TC3007 0 0 0 0 0 0 2 0 4 UP|Q9FHQ0_ARATH (Q9FHQ0) Calmodulin-binding hsp
DT710639 0 0 0 0 0 0 0 2 0 UP|STIP_SOYBN (Q43468) hsp STI (Stress inducible pron) (GmSTI)
DT710259 0 0 0 0 0 0 0 2 0 PRF|NP_175842.1 hs family protein {A. thaliana}
DT690417 0 0 0 2 0 0 0 0 0 PRF|NP_187434.1|NP_187434 hsp -related {A. thaliana}
TC4128 0 4 0 4 4 0 9 4 0 PRF|NP_191819.1 DNAJ hs family protein {A. thaliana}
DT679933 0 2 0 0 0 0 0 0 0 PRF|NP_194764.1 hsp -related {A. thaliana}
           HSFs
DT694163 0 0 0 0 2 0 0 0 0 UP|Q6VBB5_ORYSA (Q6VBB5) hsf RHSF2
DT694677 0 0 0 0 2 0 0 0 0 GB|AAQ23057.1|33591100|hsf RHSF3 {O. sativa}
DT688511 0 0 0 2 0 0 0 0 0 GB|AAQ23059.1|33591104|hsf RHSF5 {O. sativa}
TC2134 14 0 0 0 10 0 0 0 8 GB|AAQ23060.1|33591106 hsf RHSF6 {O. sativa}
TC5588 0 0 0 0 4 0 0 0 0 GB|AAQ23061.1|33591108|heat shock factor RHSF7 {O. sativa}
DT705016 0 0 0 0 0 0 2 0 0 GB|AAQ23062.1|33591110|hsf RHSF8 {O. sativa}
TC3473 0 0 0 0 4 0 0 0 0 UP|Q657C0_ORYSA (Q657C0) hs tf HSF8-like
DT679516 0 2 0 0 0 0 0 0 0 UP|Q6Z7B3_ORYSA (Q6Z7B3) hsf protein hsf8-like
TC3759 0 0 0 0 0 0 4 0 0 UP|Q94J16_ORYSA (Q94J16) hsf RHSF9
TC1477 0 2 0 0 2 0 0 0 0 UP|Q5Z9D6_ORYSA (Q5Z9D6) hsf RHSF13-like
  1. aUnigene ID. DT = singleton, TC = tentative consensus, Drought stressed root = DR1, Drought stressed shoot = DS1, Field stressed shoot = FSS, Floral meristem = TFM, Heat stressed shoot = HSS, Greenhouse grown leaf = LF1, Greenhouse grown root = RT1, Field grown stem = ST1, Young seedling = SD1.
  2. b Numbers of normalized ESTs found matching known HSPs or HSFs were listed in individual library.