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Table 2 Azucena and IR64 RSR sequences mapped at the same location. a: cDNA-AFLP fragment GenBank accession.

From: Rice Yellow Mottle Virus stress responsive genes from susceptible and tolerant rice genotypes

IDa Cultivar Variation of gene expressionb Descriptionc Chromosome Start position (bp)
gb|DQ883945 Azucena (7dpi)+ sphingosine-1-phosphate lyase 1 37379
gb|DQ883961 Azucena (2dpi)+ sphingosine-1-phosphate lyase 1 37386
gb|DQ884107 IR64 (BI)-(2,5,7dpi)- sphingosine-1-phosphate lyase 1 37386
gb|DQ884097 IR64 (BI)-(2dpi)+ ATP-binding cassette 1 661520
gb|DQ883934 Azucena (5,7dpi)- ABC transporter 1 661520
gb|DQ883962 Azucena (BI)+(3dpi)+ ABC transporter 1 7762693
gb|DQ884118 IR64 (2dpi)+ ABC transporter 1 7762700
gb|DQ883963 Azucena (5,7dpi)+ ABC transporter 1 7762703
gb|DQ884067 IR64 (5,7dpi)- OsTATC 1 25926035
gb|DQ883887 Azucena (5,7dpi)- OsTATC 1 25926035
gb|DQ883980 Azucena (BI)+ transcription factor EREBP1 2 2730720
gb|DQ883981 Azucena (BI)+ transcription factor EREBP1 2 2730722
gb|DQ883986 Azucena (3dpi)+ transcription factor EREBP1 2 2730722
gb|DQ884016 Azucena (5,7dpi)- potassium transporter HAK1p 2 5509064
gb|DQ884017 Azucena (7dpi)+ potassium transporter HAK1p 2 5509070
gb|DQ883933 Azucena (5,7dpi)- peroxisomal targeting signal 2 receptor 2 8205239
gb|DQ883935 Azucena (5dpi)+ peroxisomal targeting signal 2 receptor 2 8205240
gb|DQ883937 Azucena (5dpi)+ - 2 22063567
gb|DQ884129 IR64 (5dpi)+ - 2 22063567
gb|DQ884022 IR64 (BI)-(2,5)- senescence-associated protein 2 28710373
gb|DQ884021 IR64 (5,7dpi)- senescence-associated protein 2 28710376
gb|DQ884026 IR64 (7dpi)+ - 3 8112599
gb|DQ884027 IR64 (5dpi)+ - 3 8112604
gb|DQ883936 Azucena (3dpi)+ - 3 19981332
gb|DQ884126 IR64 (5,7dpi)+ - 3 19981332
gb|DQ883998 Azucena (BI)+(3,5,7dpi)+ splicing factor 3 28989563
gb|DQ883999 Azucena (BI)-(3,5,7dpi)- splicing factor 3 28989563
gb|DQ883950 Azucena (3,5,7dpi)+ inositol phosphate kinase 3 29491859
gb|DQ883952 Azucena (BI)+ inositol phosphate kinase 3 29491859
gb|DQ884093 IR64 (5,7dpi)- inositol phosphate kinase 3 29492176
gb|DQ884005 Azucena (BI)+(3,5,7dpi)+ receptor kinase 3 34628274
gb|DQ884006 Azucena (5dpi)+ receptor kinase 3 34628277
gb|DQ884124 IR64 (2,5,7dpi)+ receptor kinase 3 34628284
gb|DQ884032 IR64 (5,7dpi)- - 4 4985354
gb|DQ884031 IR64 (5,7dpi)- - 4 4985360
gb|DQ883901 Azucena (3,5,7dpi)- large ribosomal protein 23 4 9131675
gb|DQ883900 Azucena (BI)-(3dpi)- large ribosomal protein 23 4 9131683
gb|DQ883941 Azucena (5dpi)+ - 4 25607867
gb|DQ883946 Azucena (5dpi)+ - 4 25607880
gb|DQ884135 IR64 (BI)+(2,5dpi)+ photosystem II stability/assembly factor 6 156408
gb|DQ884136 IR64 (BI)+(2dpi)+ photosystem II stability/assembly factor 6 156408
gb|DQ883985 Azucena (BI)- - 6 294284
gb|DQ883988 Azucena (3,5,7dpi)- - 6 294284
gb|DQ884103 IR64 (BI)+(2,5,7dpi)+ NADH dehydrogenase subunit 4 6 3064929
gb|DQ884104 IR64 (BI)+(2,5,7dpi)+ NADH dehydrogenase subunit 4 6 3064929
gb|DQ883896 Azucena (7dpi)+ - 7 8998816
gb|DQ883909 Azucena (5,7dpi)+ - 7 8998816
gb|DQ884103 IR64 (BI)+(2,5,7dpi)+ NADH dehydrogenase subunit 4 7 12659627
gb|DQ884104 IR64 (BI)+(2,5,7dpi)+ NADH dehydrogenase subunit 4 7 12659627
gb|DQ883901 Azucena (3,5,7dpi)- large ribosomal protein 23 7 14240632
gb|DQ883900 Azucena (BI)-(3dpi)- large ribosomal protein 23 7 14240640
gb|DQ884133 IR64 (5,7dpi)+ - 8 501007
gb|DQ884134 IR64 (7dpi)+ - 8 501007
gb|DQ883901 Azucena (3,5,7dpi)- large ribosomal protein 23 8 9254046
gb|DQ883900 Azucena (BI)-(3dpi)- large ribosomal protein 23 8 9254054
gb|DQ884076 IR64 (5,7dpi)+ OSH45 8 11757217
gb|DQ884077 IR64 (5dpi)- OSH45 8 11757217
gb|DQ884022 IR64 (BI)-(2,5dpi)- senescence-associated protein 9 7658
gb|DQ884021 IR64 (5,7dpi)- senescence-associated protein 9 7661
gb|DQ883901 Azucena (3,5,7dpi)- large ribosomal protein 23 9 14504325
gb|DQ883900 Azucena (BI)-(3dpi)- large ribosomal protein 23 9 14504333
gb|DQ884103 IR64 (BI)+(2,5,7dpi)+ NADH dehydrogenase subunit 4 10 10583266
gb|DQ884104 IR64 (BI)+(2,5,7dpi)+ NADH dehydrogenase subunit 4 10 10583266
gb|DQ883842 Azucena (5,7dpi)+ - 11 1188582
gb|DQ884055 Azucena (5,7dpi)+ - 11 1188589
gb|DQ884103 IR64 (BI)+(2,5,7dpi)+ NADH dehydrogenase subunit 4 12 21873723
gb|DQ884104 IR64 (BI)+(2,5,7dpi)+ NADH dehydrogenase subunit 4 12 21873723
gb|DQ883842 Azucena (5,7dpi)+ - 12 26262316
gb|DQ884055 Azucena (5,7dpi)+ - 12 26262323
  1. b: pattern of deregulation, inside brackets BI for buffer inoculated control or n dpi (n days post inoculation), + for up regulation, - for down regulation. c: putative function as found after blasting against NR database.