Table 4 Expression of previously reported conserved and non-conserved miRNAs in rice.

Osa-miR156a-j

UGACAGAAGAGAGUGAGCAC

565

302

436

Osa-miR156k

UGACAGAAGAGAGAGAGCACA

9

0

9

Osa-miR156l

CGACAGAAGAGAGUGAGCAUA

520

271

390

Osa-miR159a, b

UUUGGAUUGAAGGGAGCUCUG

92

16

45

Osa-miR159c

AUUGGAUUGAAGGGAGCUCCA

89

15

41

Osa-miR159d

AUUGGAUUGAAGGGAGCUCCG

79

13

37

Osa-miR159f

CUUGGAUUGAAGGGAGCUCUA

90

16

41

Osa-miR159e

AUUGGAUUGAAGGGAGCUCCU

0

0

0

Osa-miR160a-d

UGCCUGGCUCCCUGUAUGCCA

71

43

71

Osa-miR160e

UGCCUGGCUCCCUGUAUGCCG

66

41

68

Osa-miR160f

UGCCUGGCUCCCUGAAUGCCA

30

15

21

Osa-miR162a

UCGAUAAACCUCUGCAUCCAG

6

0

1

Osa-miR162b

UCGAUAAGCCUCUGCAUCCAG

3

0

1

Osa-miR164a, b, f

UGGAGAAGCAGGGCACGUGCA

55

32

38

Osa-miR164c

UGGAGAAGCAGGGUACGUGCA

12

13

20

Osa-miR164d

UGGAGAAGCAGGGCACGUGCU

45

22

32

Osa-miR164e

UGGAGAAGCAGGGCACGUGAG

38

22

34

Osa-miR166a-d, f, n

UCGGACCAGGCUUCAUUCCCC

23

12

27

Osa-miR166e

UCGAACCAGGCUUCAUUCCCC

14

5

17

Osa-miR166g, h

UCGGACCAGGCUUCAUUCCUC

24

12

26

Osa-miR166i, j

UCGGAUCAGGCUUCAUUCCUC

1

0

0

Osa-miR166k, l

UCGGACCAGGCUUCAAUCCCU

5

6

4

Osa-miR166m

UCGGACCAGGCUUCAUUCCCU

24

13

27

Osa-miR167a-c

UGAAGCUGCCAGCAUGAUCUA

106

34

36

Osa-miR167d-j

UGAAGCUGCCAGCAUGAUCUG

111

34

36

Osa-miR168a

UCGCUUGGUGCAGAUCGGGAC

1007

533

388

Osa-miR169a

CAGCCAAGGAUGACUUGCCGA

916

230

283

Osa-miR169b, c

CAGCCAAGGAUGACUUGCCGG

916

230

285

Osa-miR169d

UAGCCAAGGAUGAAUUGCCGG

8

1

0

Osa-miR169e

UAGCCAAGGAUGACUUGCCGG

925

237

289

Osa-miR169f, g

UAGCCAAGGAUGACUUGCCUA

939

238

291

Osa-miR169h-m

UAGCCAAGGAUGACUUGCCUG

943

242

294

Osa-miR169n, o

UAGCCAAGAAUGACUUGCCUA

271

67

76

Osa-miR169p

UAGCCAAGGACAAACUUGCCGG

2

1

1

Osa-miR169q

UAGCCAAGGAGACUGCCCAUG

28

11

3

Osa-miR171a

UGAUUGAGCCGCGCCAAUAUC

16

4

7

Osa-miR171b-f

UGAUUGAGCCGUGCCAAUAUC

82

28

52

Osa-miR171g

GAGGUGAGCCGAGCCAAUAUC

1

1

0

Osa-miR171h

GUGAGCCGAACCAAUAUCACU

0

2

0

Osa-miR171i

GGAUUGAGCCGCGUCAAUAUC

8

0

2

Osa-miR172a, d

AGAAUCUUGAUGAUGCUGCAU

402

100

192

Osa-miR172b

GGAAUCUUGAUGAUGCUGCAU

377

94

179

Osa-miR172c

UGAAUCUUGAUGAUGCUGCAC

377

94

177

Osa-miR319a, b

UUGGACUGAAGGGUGCUCCC

23

3

5

Osa-miR390

AAGCUCAGGAGGGAUAGCGCC

55

30

33

Osa-miR393a-b

UCCAAAGGGAUCGCAUUGAUCU

123

23

47

Osa-miR394

UUGGCAUUCUGUCCACCUCC

1

1

2

Osa-miR395a-t

GUGAAGUGCUUGGGGGAACUC

1

0

2

Osa-miR395o

AUGAAGUGUUUGGAGGAACUC

1

0

0

Osa-miR396a-c

UUCCACAGCUUUCUUGAACUG

8

1

4

Osa-miR396d, e

UCCACAGGCUUUCUUGAACUG

20

5

8

Osa-miR397a, b

UUAUUGAGUGCAGCGUUGAUG

10

5

11

Osa-miR398a, b

UGUGUUCUCAGGUCGCCCCUG

21

5

3

Osa-miR399e-g

UGCCAAAGGAGAUUUGCCCAG

1

0

0

Osa-miR408

CUGCACUGCCUCUUCCCUGGC

0

0

1

Osa-miR435

UUAUCCGGUAUUGGAGUUGA

4

0

1

Osa-miR437

AAAGUUAGAGAAGUUUGACUU

4

2

0

Osa-miR439a-j

UGUCGAACCGCGGUUGUUCGA

4

1

0

Osa-miR440

AGUGUCUCCUGAUGAUCGGGACAA

4

1

1

Osa-miR441a-c

UACCAUCAAUAUAAAUGUGGGAAA

2

2

0

Osa-miR442

UGACGUGUAAAUUGCGAGACGAAU

6

0

0

Osa-miR444

UUGCUGCCUCAAGCUUGCUGC

3

0

1

Osa-miR445a-i

UAAAUUAGUGUAUAAACAUCCGAU

4

0

0

Osa-miR446

CAUCAAUAUGAAUAUGGGAAAUGG

2

2

3

Osa-miR528

UGGAAGGGGCAUGCAGAGGAG

0

0

1

Osa-miR529

CUGUACCCUCUCUCUUCUUC

1

1

1

Osa-miR530

AGGUGCAGAGGCAGAUGCAAC

22

6

1

Osa-miR531

CUCGCCGGGGCUGCGUGCCGCCAU

3

1

4

Osa-miR535

UGACAACGAGAGAGAGCACGC

10

7

36

Osa-miR806a-h

AUGUGCUAAAAAGUCAACGGUG

19

3

9

Osa-miR808

AUGAAUGUGGGAAAUGUAAGAA

3

1

0

Osa-miR809a-h

UGAAUGUGAGAAAUGUUAGAAU

7

4

1

Osa-miR811a-c

ACCGUUAGAUCGAGAAAUGGACGU

4

1

0

Osa-miR812a-e

GACGGACGGUUAAACGUUGGAC

3

1

2

Osa-miR813

GGGUUAUGGAAUGGGUUUUACC

3

3

1

Osa-miR814a-c

CACUUCAUAGUACAACGAAUCU

0

2

1

Osa-miR815a-c

AAGGGGAUUGAGGAGAUUGGG

2

2

0

Osa-miR816

GUGACAUAUUUUACUACAAC

0

0

0

Osa-miR817

UCCAACUUGAGGCCCGAUUGA

0

0

0

Osa-miR818a-e

AAUCCCUUAUAUUAUGGGACGG

21

5

3

Osa-miR819a-k

UCAGGUUAUAAGACUUUCUAGC

1

2

0

Osa-miR820a-c

CGGCCUCGUGGAUGGACCAGG

55

17

26