Table 2 Cis-element candidates selected from the pre-compiled list, likely corresponding to Aux/IAA genes.
From: Development of a novel data mining tool to find cis-elements in rice gene promoter regions
Motif | Transcription Factor Family*1 | Hit TU in target group*1 | Hit TU in whole*2 | Lift |
|---|---|---|---|---|
([ACGT]GAA [ACGT]){3} | HSF | 4 | 512 | 6.40 |
TGACAGGT | Helix-turn-helix(HTH) | 3 | 527 | 4.66 |
CCAC [AC]A [ACGT] [AC] [ACGT] [CT] [AC] | LIM finger | 9 | 3013 | 2.45 |
GG [ACGT]CCCAC | Helix-loop-helix factors(bHLH) | 10 | 3601 | 2.28 |
GTGG [ACGT]CCC | Helix-loop-helix factors(bHLH) | 6 | 2189 | 2.25 |
CAACA [ACGT]*CACCTG | RAV | 5 | 1865 | 2.20 |
A [TC]G [AT]A [CT]CT | EIL | 8 | 3039 | 2.16 |
AATATATTT | Helix-turn-helix(HTH) | 3 | 1405 | 1.75 |
TGTCTC | ARF | 7 | 3825 | 1.50 |
TGACGTGG | NAC | 1 | 627 | 1.31 |
CCA [ACGT]TG | LEAFY | 19 | 12084 | 1.29 |
CACCC | Cys2His2 zinc finger;RING finger | 19 | 12165 | 1.28 |
CC [AT]{6}GG | MADS(CArG boxes) | 2 | 1392 | 1.18 |
AATAAA [CT]AAA | Helix-turn-helix(HTH) | 1 | 715 | 1.15 |
CGTG [TC]G | BZR(BES1) | 9 | 6544 | 1.13 |
[GC] [GC] [GA]CGCC | BRE | 10 | 7543 | 1.09 |
AGCCGCC | EREBP | 2 | 1523 | 1.08 |
CCAAT | CCAATbox;Co-like | 19 | 14497 | 1.07 |
TATA [AT]A | TATAbox | 22 | 16849 | 1.07 |
[TA]AAAG | Dof | 27 | 21329 | 1.04 |
CA [ACGT] [ACGT]TG | Helix-loop-helix factors(bHLH);Helix-loop-helix_leucine zipper factors(bHLH-ZIP) | 28 | 22405 | 1.02 |
T{4,6} | JUMONJI | 28 | 22699 | 1.01 |
[CT] [CT]A [ACGT] [TA] [CT] [CT] | Inr | 28 | 22899 | 1.00 |
(GA){2,}| (TC){2,} | BBR/BPC | 28 | 22911 | 1.00 |