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Table 1 Characteristics of microsatellite loci

From: A clarified position for solanum lycopersicum var. cerasiformein the evolutionary history of tomatoes (solanaceae)

Locus

name

Motif

Linkage

groupa

Map

positiona

(cM)

Primer sequences (5'- 3')

SSR599

[TCATTA]2[TCA]6

9

103.00

GGATTTCTCATGGAGAATCAGTC

    

TCCCTTGATCTTGATGATGTTG

SSR111

[TC]6[TCTG]6

3

73.90

TTCTTCCCTTCCATCAGTTCT

    

TTTGCTGCTATACTGCTGACA

SSR14

[ATA]9

3

162.50

TCTGCATCTGGTGAAGCAAG

    

CTGGATTGCCTGGTTGATTT

SSR248

[TA]21

10

35.00

GCATTCGCTGTAGCTCGTTT

    

GGGAGCTTCATCATAGTAACG

SSR52

[AAC]9

7

3.00

TGATGGCAGCATCGTAGAAG

    

GGTGCGAAGGGATTTACAGA

SSR150

[CTT]7

1

115.50

ATGCCTCGCTACCTCCTCTT

    

AATCGTTCGTTCACAAACCC

SSR117

[TC]11

1

138.00

AATTCACCTTTCTTCCGTCG

    

GCCCTCGAATCTGGTAGCTT

SSR66

[ATA]8

2

25.00

TGCAACAACTGGATAGGTCG

    

TGGATGAAACGGATGTTGAA

SSR136

[CAG]7

11

11.00

GAAACCGCCTCTTTCACTTG

    

CAGCAATGATTCCAGCGATA

SSR578

[AAC]6[ATC]5

6

44.00

ATTCCCAGCACAACCAGACT

    

GTTGGTGGATGAAATTTGTG

SSR47

[AT]14

6

6.50

TCCTCAAGAAATGAAGCTCTGA

    

CCTTGGAGATAACAACCACAA

SSR594

[TCT]8

8

55.00

TTCGTTGAAGAAGATGATGGTC

    

CAAAGAGAACAAGCATCCAAGA

SSR22

[AT]11

3

99.00

GATCGGCAGTAGGTGCTCTC

    

CAAGAAACACCCATATCCGC

SSR327

[AAT]7

8

22.50

TCAGGATCAGGAGCAGGAGT

    

TGGACTTGTTCCATGAACCC

SSR593

[TAC]7

4

15.00

TGGCATGAACAACAACCAAT

    

AGGAAGTTGCATTAGGCCAT

SSR26

[CGG]7

2

77.50

CGCCTATCGATACCACCACT

    

ATTGATCCGTTTGGTTCTGC

SSR45

[AAT]14

7

80.00

TGTATCCTGGTGGACCAATG

    

TCCAAGTATCAGGCACACCA

SSR20

[GAA]8

12

37.00

GAGGACGACAACAACAACGA

    

GACATGCCACTTAGATCCACAA

SSR70

[AT]20

9

42.00

TTTAGGGTGTCTGTGGGTCC

    

GGAGTGCGCAGAGGATAGAG

SSR188

[AT]11

4

135.50

TGCAGTGAGTCTCGATTTGC

    

GGTCTCATTGCAGATAGGGC

  1. a Linkage group and map position are based on the tomato EXPEN 2000 map http://www.sgn.cornell.edu/.