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Table 3 Genes encoding up regulated transcription factors that changed their expression upon different temperature and light treatments

From: Light has a specific role in modulating Arabidopsis gene expression at low temperature

AGI-code and Description

Control

Cold/Light

Cold/Dark

Dark

At2g23340 AP2 domain transcription factor, putative

0.9 ± 0.1

8.9 ± 1.1 * (a)

2.8 ± 0.9

1.0 ± 0.2

At5g63790 No apical meristem (NAM) protein, NAC-domain protein, (ANAC102)

1.2 ± 0.1

4.1 ± 0.4 *

1.5 ± 0.6

0.9 ± 0.1

At2g47890 CONSTANS B-box like zinc finger family protein

1.1 ± 0.1

4.0 ± 0.5 *

1.6 ± 0.1

1.0 ± 0.2

At4g08150 KNAT1 homeobox-related protein

1.0 ± 0.1

3.9 ± 0.5 *

1.9 ± 0.6

0.7 ± 0.1

At5g05410 DRE binding protein (DREB2A)

1.0 ± 0.1

3.6 ± 0.3 *

2.0 ± 0.5

0.9 ± 0.2

At5g04340 C2H2 zinc finger transcription factor – related

1.0 ± 0.1

3.3 ± 0.3 *

1.9 ± 0.1

1.0 ± 0.1

At1g06040 zinc finger transcription factor STO

1.5 ± 0.2

3.3 ± 0.4 *

1.7 ± 0.3

0.8 ± 0.2

At4g18390 TCP family transcription factor, teosinte branched1 protein

1.0 ± 0.1

3.0 ± 0.3 *

1.5 ± 0.1

0.6 ± 0.1

At1g51700 Dof zinc finger protein ADOF1

1.0 ± 0.1

2.4 ± 0.5 *

1.1 ± 0.2

0.8 ± 0.1

At4g34590 bZIP family transcription factor, ATB2/bZip11

1.1 ± 0.1

2.4 ± 0.6 *

1.1 ± 0.1

0.9 ± 0.1

At5g54470 CONSTANS B-box zinc finger

0.9 ± 0.1

2.3 ± 0.2 *

1.3 ± 0.3

1.0 ± 0.2

At5g44190 myb family transcription factor, (GLK2)

1.1 ± 0.1

2.2 ± 0.4 *

1.1 ± 0.1

1.0 ± 0.3

At4g23750 AP2 domain transcription factor, (ERF)

0.9 ± 0.1

2.0 ± 0.3 *

1.3 ± 0.1

2.0 ± 0.9

At4g25490 C-repeat/DRE binding factor 1 (CBF1) (DREB1B)

1.1 ± 0.1

8.3 ± 2.7

4.0 ± 0.8

1.0 ± 0.2

At1g27730 salt-tolerance zinc finger protein, C2H2-type, ZAT10

1.1 ± 0.2

6.2 ± 3.7

7.2 ± 1.2

1.1 ± 0.7

At5g57660 CONSTANS B-box like zinc finger family protein (COL5)

1.4 ± 0.2

5.1 ± 1.0

4.1 ± 0.7

4.3 ± 0.5

At2g46830 MYB-related transcription factor (CCA1)

1.0 ± 0.1

3.8 ± 0.4

3.7 ± 2.1

1.0 ± 0.2

At5g59820 zinc finger protein ZAT12

1.0 ± 0.1

3.7 ± 1.1

2.3 ± 0.5

1.1 ± 0.1

At1g49720 abscisic acid responsive elements-binding factor, ABF1/AtbZip35

1.0 ± 0.1

3.4 ± 0.5

2.1 ± 0.7

0.7 ± 0.1

At4g28140 AP2 domain transcription factor, RAP2.4

0.9 ± 0.1

3.2 ± 0.6

1.7 ± 1.3

1.0 ± 0.1

At1g13260 AP2 domain transcription factor, putative (RAV1)

1.1 ± 0.1

3.1 ± 1.0

4.2 ± 0.8

0.9 ± 0.1

At5g08790 No apical meristem (NAM) protein family, NAC-domain protein (ATAF2)

1.2 ± 0.2

2.9 ± 0.5

1.3 ± 0.6

1.0 ± 0.4

At5g37260 MYB family transcription factor

0.9 ± 0.1

2.9 ± 0.4

4.4 ± 2.2

1.2 ± 0.1

At4g12040 expressed protein zinc finger protein, AN1-like

1.0 ± 0.1

2.8 ± 0.3

3.4 ± 0.5

2.2 ± 0.3

At2g45820 remorin, a non-specific DNA binding protein

1.3 ± 0.2

2.7 ± 0.5

1.9 ± 0.6

1.7 ± 0.2

At3g52800 zinc finger – like protein zinc finger protein, AN1-like

1.0 ± 0.1

2.6 ± 0.7

3.6 ± 0.8

1.6 ± 0.5

At2g22430 homeobox-leucine zipper protein ATHB-6 (HD-Zip)

1.6 ± 0.2

2.1 ± 0.5

2.1 ± 0.5

1.6 ± 0.3

At5g02840 myb family transcription factor (SANT-domain)

1.2 ± 0.1

2.1 ± 0.3

1.7 ± 0.4

2.0 ± 0.3

At4g32800 AP2 domain transcription factor TINY

1.0 ± 0.2

2.1 ± 0.1

2.3 ± 0.8

0.7 ± 0.1

At5g52510 scarecrow-like transcription factor 8 (SCL8)

1.1 ± 0.1

2.0 ± 0.2

3.6 ± 1.1

1.1 ± 0.2

At3g55980 zinc finger transcription factor (PEI1), CCCH-type

0.9 ± 0.1

1.2 ± 0.7

3.8 ± 0.4 *

1.1 ± 1.2

At3g07650 CONSTANS B-box like zinc finger (COL9)

1.0 ± 0.1

1.9 ± 0.3

3.5 ± 0.5 *

1.5 ± 0.3

At2g21650 myb family transcription factor

1.0 ± 0.1

1.3 ± 0.1

2.2 ± 1.5

0.9 ± 0.2

At5g58900 myb family transcription factor (SANT Domain)

1.1 ± 0.1

1.6 ± 0.2

2.2 ± 0.2

0.9 ± 0.2

At2g03340 WRKY family transcription factor

1.1 ± 0.1

1.7 ± 0.2

2.1 ± 0.9

0.4 ± 0.1

At3g61260 DNA-binding protein-related DNA-binding protein (dbp)

1.1 ± 0.1

1.6 ± 0.4

2.1 ± 0.5

5.2 ± 0.9

At3g16770 AP2 domain transcription factor RAP2.3

1.4 ± 0.2

1.7 ± 0.3

1.7 ± 0.3

8.5 ± 4.1

At2g25900 CCCH-type zinc finger

1.3 ± 0.1

0.8 ± 0.1

1.1 ± 0.3

5.1 ± 1.0

At5g07100 WRKY family transcription factor SPF1

1.2 ± 0.1

1.0 ± 0.1

1.7 ± 0.5

3.6 ± 0.5

At1g02340 bHLH protein (HFR1)

1.3 ± 0.2

1.6 ± 0.2

1.4 ± 0.1

2.8 ± 0.7

At1g34370 zinc finger protein-related similar, C2H2-type

1.0 ± 0.1

1.2 ± 0.2

0.8 ± 0.1

2.6 ± 0.2

At2g42280 bHLH protein family

1.0 ± 0.1

1.0 ± 0.1

1.1 ± 0.1

2.5 ± 0.1

At3g59060 bHLH protein family

1.2 ± 0.1

0.7 ± 0.2

1.1 ± 0.2

2.3 ± 0.3

At5g56140 KH domain protein

1.1 ± 0.1

1.1 ± 0.1

1.1 ± 0.1

2.3 ± 0.2

At5g11260 bZIP protein HY5 identical to HY5

0.8 ± 0.1

1.5 ± 0.2

1.3 ± 0.1

2.1 ± 0.2

At4g17460 homeobox-leucine zipper protein HAT1 (HD-Zip protein 1)

1.2 ± 0.1

0.8 ± 0.1

0.9 ± 0.1

2.1 ± 0.3

At1g13450 DNA binding protein GT-1-related

1.1 ± 0.1

0.7 ± 0.1

0.9 ± 0.1

2.1 ± 0.1

At5g37720 RNA and export factor binding protein, putative transcriptional coactivator ALY, Mus musculus

1.2 ± 0.1

1.2 ± 0.1

1.0 ± 0.1

2.0 ± 0.1

  1. Control represents internal variation (technical and/or biological) of different leaf samples from growth condition. Value ± s.e. indicates expression ratio of Treatment/Control after normalization ± standard error of the mean (n = 3–4). Genes in the table are listed according to decreasing expression ratios in different condition. The big groups of transcription factors that are up regulated at a given condition are underlined. (a)Genes that differ significantly (Students t test p-value less than 0.05) in their expression between the Cold/Light and Cold/Dark condition is marked with an asterisk (*). Values in bold indicate the quality control of gene expression (a statistical test of differential expression for a specific condition, Students t test p-value less than 0.05).
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BMC Plant Biology

ISSN: 1471-2229

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