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Table 5 SNPs among Mal d 1.01 sequences as found in databases.

From: Assessment of allelic diversity in intron-containing Mal d 1 genes and their association to apple allergenicity

Allele

Cultivarb

Nucleotide position in coding sequencesc

(Genbank accession no)a

 

1 1

2 1

2 9

4 9

7 5

8 4

2 2 2

2 9 4

3 3 4

3 6 0

3 6 4

4 0 4

4 0 5

4 0 8

4 1 3

4 1 9

4 2 0

4 3 5

4 5 3

4 5 6

4 5 8

4 6 5

4 6 8

4 7 1

  

Consensus nucleotide

  

G

G

T

T

T

C

G

A

T

C

A

C

T

A

A

C

C

G

T

G

A

C

C

A

Mal d 1.0101 (X83672)

GS

A

          

T

            

Mal d 1.0102 (Z48969)

GD

A

A

      

G

 

C

T

C

  

G

T

 

C

 

G

G

T

C

Mal d 1.0103 (AF124823)

JB

A

     

A

          

A

 

A

G

   

Mal d 1.0104 (AF124829)

JG

A

 

A

C

C

T

   

T

              

Mal d 1.0105.01 (AF124830, AY428579)

GD, GA, PM, GD, JO, FJ

         

T

              

Mal d 1.0105.02

PM, FS, GD, PS, IM, JO, CO, DS

      

A

          

A

      

Mal d 1.0105.03

PM, PS

                        

Mal d 1.0105.04

RD, FJ

      

A

                 

Mal d 1.0106 (AF124831)

GL

       

C

                

Mal d 1.0107 (AF124832)

GA

A

 

A

 

C

T

A

      

C

C

 

T

 

C

     

Mal d 1.0108 (AF126402)

GD

A

        

T

              

Mal d 1.0109 (AY026910)

GD-seedling, RD

           

T

            

Mal d 1.02-CONS d

 

A

G

A

C

C

T

G

G

TC

C

A

C

T

A

A

C

T

G

C/T

G

G

C

C

A

  1. a Alleles in bold are confirmed by our own sequences (see Table). Numbers in brackets indicate Genbank accessions of previous sequences.
  2. b Cultivar abbreviations additional to those in Table 2: GA-Gala, JB-Jamba, GL-Gloster, GD-seedling: seedling from Golden Delicious. Cultivar names in bold indicate material from this study.
  3. cPosition refers to the coding sequence and is presented vertically. SNP nucleotides given in bold are our own observations. SNPs in italic are identified errors after cross checking.
  4. dMal d 1.02 consensus SNPs compared with Mal d 1.01.
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BMC Plant Biology

ISSN: 1471-2229

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