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Table 9 DEGs in parental genomes

From: Transcriptomic profiling of mature embryo from an elite super-hybrid rice LYP9 and its parental lines

93-11

PA64s

5'UTR

Coding

3'UTR

Motif

9311_Chr01_0275

Pa64_Chr01_0330

N

N

N

Y

9311_Chr02_0049

Pa64_Chr02_0052

N

N

N

N

9311_Chr02_2243

Pa64_Chr02_2903

N

N

N

N

9311_Chr03_0335

Pa64_Chr03_0342

N

N

N

N

9311_Chr03_1553

Pa64_Chr02_1741

N

N

N

N

9311_Chr03_2170

Pa64_Chr02_1375

N

N

N

N

9311_Chr05_2916

Pa64_Chr05_2748

N

N

N

N

9311_Chr05_2972

Pa64_Chr05_2805

N

N

N

N

9311_Chr07_1714

Pa64_Chr07_1619

N

N

N

N

9311_Chr01_4347

Pa64_Chr01_4085

N

N

Y

Y

9311_Chr03_0234

Pa64_Chr03_0241

N

N

Y

Y

9311_Chr10_1957

Pa64_Chr10_1617

N

N

Y

Y

9311_Chr01_2124

Pa64_Chr01_2174

Y

N

N

Y

9311_Chr11_1172

Pa64_Chr11_1013

Y

N

N

Y

9311_Chr05_0084

Pa64_Chr05_0081

Y

N

Y

Y

9311_Chr07_0583

Pa64_Chr07_0573

Y

N

Y

Y

9311_Chr11_0059

Pa64_Chr11_0066

Y

N

Y

Y

9311_Chr01_0387

Pa64_Chr01_0451

Y

Y

Y

Y

9311_Chr03_0613

Pa64_Chr03_0602

Y

Y

Y

Y

9311_Chr03_1065

Pa64_Chr03_1056

Y

Y

Y

Y

9311_Chr04_0532

Pa64_Chr03_0450

Y

Y

Y

Y

9311_Chr06_3185

Pa64_Chr06_2801

Y

Y

Y

Y

  1. N stands for insignificant differences (less than 3 bp in the sequence) and Y stands for significant differences (more than 3 bp in the sequence or motif differences).