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Table 4 High-abundance genes and functional annotations

From: Transcriptomic profiling of mature embryo from an elite super-hybrid rice LYP9 and its parental lines

Unigene ID

Abundance

TPMa

Functional annotation

Unigene_0001

2739

99354

Cytochrome P450 monooxygenaseb

Unigene_0002

1121

40663

rRNA intron-encoded homing endonuclease

Unigene_0003

443

16069

Os11g0211800

Unigene_0004

379

13748

Em-proteinc

Unigene_0005

272

9867

Ramy1

Unigene_0006

256

9286

Lectinb

Unigene_0007

249

9032

LEA3b

Unigene_0008

238

8633

RAB21b

Unigene_0009

219

7944

Thaumatin-like proteinb

Unigene_0010

210

7618

HSP16.9b

Unigene_0011

209

7581

HSP70b

Unigene_0012

203

7364

HSP17.4b

Unigene_0013

197

7146

NAD-/NADP-dependent oxidoreductase

Unigene_0014

171

6203

Late embryogenesis abundant protein D-34b

Unigene_0015

164

5949

Senescence-associated proteinb

Unigene_0016

163

5913

Glyceraldehyde-3-phosphate dehydrogenase

Unigene_0017

161

5840

RAB24b

Unigene_0018

151

5477

E2

Unigene_0019

149

5405

EF-1 alpha

Unigene_0020

144

5223

Os03g0723400

Unigene_0021

139

5042

Rab16bb

Unigene_0022

138

5006

Ec proteinc

Unigene_0023

136

4933

Seed maturation proteinb

Unigene_0024

117

4244

Hypothetical protein APECO1_2466

Unigene_0025

111

4026

Os04g0589800

Unigene_0026

111

4026

Bowman Birk trypsin inhibitorb

Unigene_0027

110

3990

RAB25b

Unigene_0028

110

3990

HSP90(81-2)b

Unigene_0029

109

3954

Multiple stress-responsive zinc-finger proteinb

Unigene_0030

105

3809

Embryogenic-cell protein 40c

Unigene_0031

103

3736

DnaJ proteinb

Unigene_0032

100

3627

Plasma membrane associated protein

  1. aTranscript per million,b stress-tolerance associated genes, and c development-associated genes.