Bioinformatic analysis of the CLE signaling peptide family

BMC Plant Biology

Table 2 Detailed characteristics of multi-CLE domain proteins

CLE	Database	Length	Motif	Start	Stop	Motif Sequence	Distance
CLE75	O. sativa genome	250	1	51	63	IGVGKRLTPTGPNPVHNEFQP	51
			2	87	99	IGNGKRLTPTGPDPIHNEFQP	36
			3	123	135	IGDGKRLTPTGPDPVHNKFQP	36
			4	155	167	IGDGKRLTPTGPDPIHNEFQP	32
			5	191	203	IGDGKRLTPIGPDPIHNEFPP	36
			6	223	235	IGDGKRLTPTGPDPVHNEFQP	36
CLE76	O. sativa genome	195	1	65	77	DFSVLRKVPTGPDPITSDPPP	65
			2	94	106	QFSVLRKVPTGPDPITSDPPP	29
			3	119	131	EFPVLREVPSGPDPITSDPPP	25
			4	146	158	EFPVLREVPSGPDPITSDPPP	27
CLE68	M. truncatula genome	181	1	70	82	EIGELRKVPSSPDPIHNSDID	70
			2	128	140	QIRGLTKVPTSPDPIHNSDSV	58
			3	157	169	QIGRARMVSSGPNPLHNRLIN	29
CLE31	T. aestivum ESTs	175	1	75	97	IMMAPRPVPSGPDPIHHCPPA	75
			2	112	124	AMVAPRPVPSGPNPIHHRPPH	37
			3	145	157	VMVAPMPIPSGPDPIHHCPPA	33
CLE30	T. aestivum ESTs	175	1	61	73	VMVAPRPVPSGPDPIHHRPHA	61
			2	98	110	VMVAPRPVPSGPNPIHHFPAP	37

Detailed characteristics of identified CLE members that carry multiple CLE motifs. The table contains information about database origin, protein length in amino acids, and motif position as well as motif sequences and distance in amino acids between the motifs in the protein sequence.

ISSN: 1471-2229