From: Comparative analysis of ESTs involved in grape responses to Xylella fastidiosa infection
Biological process | leaf | stem | shoot | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
lib-1 | lib-4 | lib-7 | lib-8 | lib-2 | lib-5 | lib-3 | lib-6 | lib-9 | lib-11 | lib-12 | lib-10 | |
Inf-Res | Cont-Res | Inf-Sus | Cont-Sus | Inf-Res | Cont-Res | Inf-Sus | Cont-Sus | Inf-Res | Cont-Res | Inf-Sus | Cont-Sus | |
Signal transduction and defense response | 6.50 | 0.32 | 3.09 | 3.15 | 5.31 | 2.35 | 0.68 | |||||
Response to stress & pathgenic fungi | 0.85 | 0.34 | 0.39 | 0.52 | 0.97 | 0.34 | ||||||
Protein modification and targeting | 1.92 | 2.54 | 1.37 | 1.97 | 0.78 | 2.56 | 0.97 | 0.68 | ||||
Protein catabolism | 0.32 | 0.34 | ||||||||||
Protein carbohydrate and fatty acid metabolism | 0.96 | 0.81 | 0.63 | 1.03 | 0.39 | 1.04 | 0.65 | 0.68 | ||||
Nucleic acid metabolism | 0.81 | 0.34 | 0.79 | 0.52 | 0.32 | 0.68 | ||||||
Electron protein and other transport | 0.96 | 0.81 | 0.85 | 1.27 | 0.69 | 3.54 | 0.88 | 3.13 | 1.62 | 1.69 | 2.30 | |
Biosynthesis | 1.69 | 0.32 | 0.39 | 0.52 | 0.32 | 1.02 | ||||||
Xenobiotic metabolism | 3.25 | 0.34 | 0.39 | 13.27 | 0.26 | 0.32 | 1.15 | |||||
Others | 0.32 | 0.34 | 1.57 | 0.32 | 0.68 | |||||||
Cellular component | leaf | stem | shoot | |||||||||
lib-1 | lib-4 | lib-7 | lib-8 | lib-2 | lib-5 | lib-3 | lib-6 | lib-9 | lib-11 | lib-12 | lib-10 | |
Chloroplast | 11.54 | 15.25 | 11.75 | 0.34 | 0.88 | 0.78 | 3.42 | 2.59 | 4.41 | 8.05 | ||
Integral to membrane | 0.81 | 1.37 | 4.72 | 0.88 | 1.04 | 0.65 | 0.68 | |||||
Nucleus | 2.88 | 0.85 | 1.37 | 0.39 | 0.78 | 0.85 | 0.32 | 0.34 | 1.15 | |||
Membrane | 1.92 | 0.69 | 1.57 | 0.52 | 1.69 | |||||||
Oxygen evolving complex | 2.88 | 1.69 | 1.59 | 0.26 | 0.32 | 0.34 | 1.15 | |||||
Nucleosome | 2.88 | 1.69 | 0.32 | 0.69 | 0.52 | |||||||
Mitochondrion | 0.96 | 0.69 | 0.39 | 0.52 | 0.32 | 1.02 | ||||||
Extracellular space | 0.85 | 0.32 | 1.03 | 0.39 | 0.78 | 0.32 | 0.34 | 1.15 | ||||
Golgi apparatus | 0.34 | 0.39 | 0.26 | 0.65 | 0.68 | |||||||
Ubiquitin ligase complex | 0.63 | 0.39 | 0.26 | |||||||||
Phosphopyruvate hydratase complex | 0.39 | 0.26 | 0.34 | |||||||||
Protein phosphatase type 2A complex | 0.39 | 0.00 | 0.65 | |||||||||
leaf | stem | shoot | ||||||||||
lib-1 | lib-4 | lib-7 | lib-8 | lib-2 | lib-5 | lib-3 | lib-6 | lib-9 | lib-11 | lib-12 | lib-10 | |
Cell wall | 0.52 | 1.71 | 0.34 | 1.15 | ||||||||
Microsome | 0.52 | 0.34 | ||||||||||
Cytosol | 0.34 | 0.26 | 1.15 | |||||||||
Chromatin | 0.85 | 0.34 | ||||||||||
Extracellular region | 1.63 | 0.39 | ||||||||||
Mitochondrial inner membrane | 0.96 | 0.34 | ||||||||||
Plasma membrane | 0.32 | 0.85 | ||||||||||
Photosystem I | 0.63 | |||||||||||
Photosystem I reaction center | 0.85 | 0.63 | ||||||||||
Ribulose bisphosphate carboxylase complex | 0.81 | 0.39 | 0.26 | |||||||||
Golgi membrane | 0.34 | |||||||||||
Cytoplasm | 0.26 | |||||||||||
Mitochondrial outer membrane | 0.34 | |||||||||||
Endoplasmic reticulum | 0.26 | |||||||||||
Chloroplast inner membrane | 0.34 | |||||||||||
Others | ||||||||||||
Molecular function | leaf | stem | shoot | |||||||||
lib-1 | lib-4 | lib-7 | lib-8 | lib-2 | lib-5 | lib-3 | lib-6 | lib-9 | lib-11 | lib-12 | lib-10 | |
Ubiquitin conjugating enzyme activity | 1.03 | |||||||||||
Transporter activity | 0.81 | 0.85 | 0.32 | 1.37 | 1.57 | 1.31 | 1.29 | 3.39 | ||||
Transcription and translation factor activity | 0.32 | 1.03 | 0.79 | 2.65 | 0.78 | 1.71 | 1.94 | 1.02 | 1.15 | |||
Structural constituent of ribosome | 4.81 | 7.63 | 2.54 | 3.44 | 1.57 | 4.42 | 4.70 | 10.26 | 8.74 | 8.47 | 3.45 | |
Siganl transducer and receptor activity | 0.32 | 0.79 | 0.52 | 0.32 | 1.02 | |||||||
RNA binding | 0.96 | 0.85 | 0.32 | 1.03 | 0.88 | 1.04 | 1.71 | 1.62 | 1.69 | 4.60 | ||
Nutrient reservoir activity | 3.25 | 7.08 | 0.52 | |||||||||
Molecular function unknown | 1.92 | 0.81 | 1.69 | 1.03 | 0.79 | 0.88 | 0.52 | 0.65 | 1.36 | 2.30 | ||
Ligand binding/carrier | 12.50 | 11.38 | 6.78 | 3.49 | 11.00 | 11.42 | 3.54 | 13.58 | 9.40 | 6.15 | 10.5 | 8.05 |
Enzyme inhibitor activity | 0.81 | 0.32 | 0.34 | 0.39 | 1.04 | 0.65 | ||||||
leaf | stem | shoot | ||||||||||
lib-1 | lib-4 | lib-7 | lib-8 | lib-1 | lib-4 | lib-7 | lib-8 | lib-1 | lib-4 | lib-7 | lib-8 | |
Catalytic activity | 0.85 | 0.32 | 0.34 | 0.79 | 1.04 | 0.85 | 1.62 | 1.69 | 1.15 | |||
Others | 0.96 | 0.85 | 0.63 | 0.69 | 1.97 | 2.65 | 0.78 | 2.56 | 1.62 | 1.36 | ||
Hydrolase activity, hydrolysing O-glycosyl compounds | 2.44 | 0.85 | 0.32 | 2.06 | 1.57 | 0.88 | 1.04 | 2.56 | 2.27 | 2.03 | 1.15 | |
Transferase activity | 1.63 | 0.85 | 1.59 | 0.34 | 1.18 | 0.88 | 0.52 | 1.71 | 0.65 | 1.36 | ||
Protein kinase and phosphatase activity | 2.78 | 0.85 | 1.03 | 1.18 | 0.52 | 1.71 | 0.97 | 3.39 | 1.15 | |||
Monooxygenase/oxidoreductase activity | 10.58 | 1.63 | 10.17 | 3.17 | 0.69 | 1.18 | 3.54 | 2.87 | 6.84 | 2.59 | 2.71 | 2.30 |
GTP binding and GTPase activity | 0.96 | 0.81 | 1.69 | 0.32 | 2.06 | 1.57 | 1.57 | 1.71 | 1.62 | 2.71 | 2.30 | |
Isomerase activity | 0.96 | 1.63 | 1.69 | 0.32 | 0.69 | 1.57 | 0.88 | 1.57 | 2.56 | 1.62 | 1.02 | 1.15 |
Endopeptidase activity | 2.88 | 1.69 | 2.06 | 3.54 | 0.78 | 1.02 | 3.45 | |||||
Dehydrogenase activity | 0.32 | 0.69 | 0.39 | 0.52 | 0.85 | 0.34 | ||||||
Chitinase activity | 1.63 | 0.32 | 0.69 | 1.57 | 0.52 | 0.32 | 0.68 | |||||
Hits | 68 | 52 | 77 | 107 | 133 | 134 | 60 | 203 | 63 | 143 | 191 | 43 |
No hits | 36 | 71 | 41 | 208 | 157 | 120 | 53 | 180 | 54 | 166 | 104 | 44 |
Total sequences | 104 | 123 | 118 | 315 | 290 | 254 | 113 | 383 | 117 | 309 | 295 | 87 |
% Unique(hits) | 34.615 | 57.72 | 34.75 | 66.03 | 54.13 | 47.244 | 46.9 | 47 | 46.15 | 53.722 | 35.3 | 50.57 |