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Table 3 Comparison of the number of genes per pathway in Arabidopsis and in the full-length cDNA library according to the automated annotation. The 40 KEGG pathways with the largest number of cassava genes are presented.

From: Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response

Accession

KEGG Pathway

Cassava Genes

Arabidopsis Genes

Pathway Coverage

ath03010

Ribosome

89

110

0.81

ath00190

Oxidative phosphorylation

54

89

0.61

ath00195

Photosynthesis

41

69

0.59

ath00230

Purine metabolism

36

67

0.54

ath00240

Pyrimidine metabolism

29

54

0.54

ath03050

Proteasome

26

31

0.84

ath00010

Glycolysis/Gluconeogenesis

22

22

1.00

ath00710

Carbon fixation

22

24

0.92

ath00500

Starch and sucrose metabolism

22

29

0.76

ath00193

ATP synthesis

21

29

0.72

ath00620

Pyruvate metabolism

19

24

0.79

ath00970

Aminoacyl-tRNA synthetases

17

24

0.71

ath00251

Glutamate metabolism

16

23

0.70

ath00100

Biosynthesis of steroids

16

23

0.70

ath00400

Phenylalanine, tyrosine and tryptophan biosynthesis

15

24

0.63

ath00030

Pentose phosphate pathway

14

15

0.93

ath00020

Citrate cycle (TCA cycle)

14

15

0.93

ath00860

Porphyrin and chlorophyll metabolism

13

20

0.65

ath03020

RNA polymerase

13

21

0.62

ath00260

Glycine, serine and threonine metabolism

13

24

0.54

ath00252

Alanine and aspartate metabolism

11

16

0.69

ath00330

Arginine and proline metabolism

11

19

0.58

ath03022

Basal transcription factors

11

21

0.52

ath00670

One carbon pool by folate

10

11

0.91

ath00052

Galactose metabolism

10

12

0.83

ath03060

Protein export

10

13

0.77

ath00051

Fructose and mannose metabolism

10

14

0.71

ath00640

Propanoate metabolism

10

15

0.67

ath00350

Tyrosine metabolism

10

17

0.59

ath00071

Fatty acid metabolism

9

10

0.90

ath00630

Glyoxylate and dicarboxylate metabolism

9

12

0.75

ath00290

Valine, leucine and isoleucine biosynthesis

9

12

0.75

ath00510

N-Glycan biosynthesis

9

15

0.60

ath00380

Tryptophan metabolism

9

15

0.60

ath00910

Nitrogen metabolism

9

16

0.56

ath00900

Terpenoid biosynthesis

8

8

1.00

ath00941

Flavonoid biosynthesis

8

9

0.89

ath00360

Phenylalanine metabolism

8

10

0.80

ath00940

Stilbene, coumarine and lignin biosynthesis

8

11

0.73

ath00280

Valine, leucine and isoleucine degradation

8

16

0.50