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Table 5 Summary of enhancer trap lines

From: Global expression analysis of nucleotide binding site-leucine rich repeat-encoding and related genes in Arabidopsis

Enhancer trap line

Gene interrupted

Gene type

RACE -PCRa

GUS staining

Microarray datab

MPSS datac

SET6934

At1g72870

TN

ND

no

108.3(M)

1–15(14)

SET7157

At1g65850

TNL

ND

no

55.4(A)

3–18(4)

SET3935

At5g17680

TNL

ND

no

54.4(A)

3-3(1)

SET7450

At1g59780

CNL

ND

no

41.6(A)

3–45(3)

SET6003

At1g61300

NL

Expressed

no

552.5(P)(probe set cross-hybridizes to At1g61180, At1g61190, and At1g61310)

4-179(37), MPSS tags also represent At1g61180, At1g61190, and At1g61310.

ET1927

At1g72910

TN

Expressed

Weak staining in leaf; weak induction by BTH

5566.9(P) (probe set cross-hybridizes to At1g72930)

2–127(5), two MPSS tags also represent other genes.

ET6374

RPP5 (At4g16950 in Col)

TNL

Expressed

no

1377.5(P) (probe set may cross-hybridize to At4g16860, At4g16890, and At4g16920)

3–168(31), several MPSS tags also represent several other genes

  1. a ND = no detectable expression.
  2. b Called present (P), marginal (M), or absent (A) in microarray expression data in control leaf sample of SA experiment [79].
  3. c Range of adjPPM or TPM (# of libraries with expression detected).