Skip to main content

Table 4 MPSS libraries of Arabidopsis thaliana from public MPSS databases

From: Global expression analysis of nucleotide binding site-leucine rich repeat-encoding and related genes in Arabidopsis

Library Codea Ecotype Tissue Description # signatures
CAF 1 Columbia Callus Callus – actively growing 1959539
INF 2 Columbia Inflorescence Inflorescence – mixed stage, immature buds 1774306
LEF 3 Columbia Leaf Leaves – 21 day, untreated 2884598
ROF 4 Columbia Root Root – 21 day, untreated 3642632
SIF 5 Columbia Silique Silique – 24 to 48 hr post-fertilization 2012859
AP1 6 Columbia Inflorescence ap1-10 inflorescence – mixed stage, immature buds 2964724
AP3 7 Columbia Inflorescence ap3-6 inflorescence – mixed stage, immature buds 2435965
AGM 8 Columbia Inflorescence agamous inflorescence – mixed stage, immature buds 2575670
INS 9 Columbia Inflorescence Inflorescence – mixed stage, immature buds 2890894
ROS 10 Columbia Root Root – 21 day, untreated 2458436
SAP 11 Columbia Inflorescence sup/ap1 inflorescence – mixed stage, immature buds 2310350
S04 12 Columbia Leaf Leaves, 4 hr post SA treatment 3006975
S52 13 Columbia Leaf Leaves, 52 hr post SA treatment 2964840
LES 14 Columbia Leaf Leaves – 21 day, untreated 3109385
GSE 15 Columbia Seedling Germinating seedlings 2550655
CAS 16 Columbia Callus Callus – actively growing 1919458
SIS 17 Columbia Silique Silique – 24 to 48 hr post-fertilization 2349283
  1. aLibraries 1 to 5 were made using the classic MPSS protocol; all subsequent libraries were made using signature MPSS [75, 76].