Global expression analysis of nucleotide binding site-leucine rich repeat-encoding and related genes in Arabidopsis

Table 4 MPSS libraries of Arabidopsis thaliana from public MPSS databases

Library	Code^a	Ecotype	Tissue	Description	# signatures
CAF	1	Columbia	Callus	Callus – actively growing	1959539
INF	2	Columbia	Inflorescence	Inflorescence – mixed stage, immature buds	1774306
LEF	3	Columbia	Leaf	Leaves – 21 day, untreated	2884598
ROF	4	Columbia	Root	Root – 21 day, untreated	3642632
SIF	5	Columbia	Silique	Silique – 24 to 48 hr post-fertilization	2012859
AP1	6	Columbia	Inflorescence	ap1-10 inflorescence – mixed stage, immature buds	2964724
AP3	7	Columbia	Inflorescence	ap3-6 inflorescence – mixed stage, immature buds	2435965
AGM	8	Columbia	Inflorescence	agamous inflorescence – mixed stage, immature buds	2575670
INS	9	Columbia	Inflorescence	Inflorescence – mixed stage, immature buds	2890894
ROS	10	Columbia	Root	Root – 21 day, untreated	2458436
SAP	11	Columbia	Inflorescence	sup/ap1 inflorescence – mixed stage, immature buds	2310350
S04	12	Columbia	Leaf	Leaves, 4 hr post SA treatment	3006975
S52	13	Columbia	Leaf	Leaves, 52 hr post SA treatment	2964840
LES	14	Columbia	Leaf	Leaves – 21 day, untreated	3109385
GSE	15	Columbia	Seedling	Germinating seedlings	2550655
CAS	16	Columbia	Callus	Callus – actively growing	1919458
SIS	17	Columbia	Silique	Silique – 24 to 48 hr post-fertilization	2349283

^aLibraries 1 to 5 were made using the classic MPSS protocol; all subsequent libraries were made using signature MPSS [75, 76].

ISSN: 1471-2229