Skip to main content

Table 2 Summary of EST, RACE, MPSS, and microarray expression analyses of NBS-LRR-encoding and related genes

From: Global expression analysis of nucleotide binding site-leucine rich repeat-encoding and related genes in Arabidopsis

Predicted Protein Domains a Code # based on prior annotation # based on full manual annotation ESTs (# expressed/# studied) 2002 ESTs (# expressed/#studied) 2006 RACE (# expressed/# studied)b MPSS (# expressed/# studied) Microarray (#P or M/# studied)c # detected by both MPSS and microarray
CC-NBS-LRR CNL 48 51 28/49 36/51 26/35 46/49 32/47 31
NBSCC-LRR NL 2 4 2/4 3/4 1/1 3/4 2/3 2
TIR-NBS-LRR TNL 82 83 46/83 56/83 38/50 79/83 50/80 50
NBSTIR-LRR NL 2 2 0/2 0/2 0/1 1/2 0/2 0
TIR-NBS-LRR-X TNLX 5 5 3/5 4/5 4/5 5/5 3/5 3
TIR-NBS-TIR-NBS-LRR TNTNL 2 2 2/2 2/2 2/2 2/2 1/2 1
TIR-TIR-NBS-LRR TTNL 0 2 2/2 2/2 2/2 2/2 2/2 2
Total with LRRs   141 149       
TIR-NBS TN 14 21 9/15 10/15 5/9 13/15 10/15 10
TIR-X TX 23 30       
X-TIR-NBS-X XTNX 0 2 2/2 2/2   2/2 1/2 1
CC-NBS CN 4 4 3/4 3/4 2/2 4/4 1/2 1
CC-NBS-X CNX 1 1 1/1 1/1 1/1 1/1 1/1 1
CC (related to CNL) C 0 1       
NBSCC N 1 1 0/1 1/1 0/1 1/1 1/1 1
Total without LRRs   43 58       
Total    207 98/170 120/172 81/109 159/170 104/162 103
  1. a "CC" and "TIR" subscript indicates motifs predictive of a CC or TIR domain N-terminal to the NBS. The first four columns are from [7].
  2. b NBS-LRR-encoding and related genes for which RACE-PCR products were detected for either 5' or 3'end, or both.
  3. c Number called as present (P) or marginal (M) in one of the three control Col-0 samples collected 4 hours post treatment with 0.02% silwet (experiment described in [79]; additional file 1). ATH1 array was used for transcript profiling.