|
Predicted Protein Domains a
|
Code
|
# based on prior annotation
|
# based on full manual annotation
|
ESTs (# expressed/# studied) 2002
|
ESTs (# expressed/#studied) 2006
|
RACE (# expressed/# studied)b
|
MPSS (# expressed/# studied)
|
Microarray (#P or M/# studied)c
|
# detected by both MPSS and microarray
|
|---|
|
CC-NBS-LRR
|
CNL
|
48
|
51
|
28/49
|
36/51
|
26/35
|
46/49
|
32/47
|
31
|
|
NBSCC-LRR
|
NL
|
2
|
4
|
2/4
|
3/4
|
1/1
|
3/4
|
2/3
|
2
|
|
TIR-NBS-LRR
|
TNL
|
82
|
83
|
46/83
|
56/83
|
38/50
|
79/83
|
50/80
|
50
|
|
NBSTIR-LRR
|
NL
|
2
|
2
|
0/2
|
0/2
|
0/1
|
1/2
|
0/2
|
0
|
|
TIR-NBS-LRR-X
|
TNLX
|
5
|
5
|
3/5
|
4/5
|
4/5
|
5/5
|
3/5
|
3
|
|
TIR-NBS-TIR-NBS-LRR
|
TNTNL
|
2
|
2
|
2/2
|
2/2
|
2/2
|
2/2
|
1/2
|
1
|
|
TIR-TIR-NBS-LRR
|
TTNL
|
0
|
2
|
2/2
|
2/2
|
2/2
|
2/2
|
2/2
|
2
|
|
Total with LRRs
| |
141
|
149
| | | | | | |
|
TIR-NBS
|
TN
|
14
|
21
|
9/15
|
10/15
|
5/9
|
13/15
|
10/15
|
10
|
|
TIR-X
|
TX
|
23
|
30
| | | | | | |
|
X-TIR-NBS-X
|
XTNX
|
0
|
2
|
2/2
|
2/2
| |
2/2
|
1/2
|
1
|
|
CC-NBS
|
CN
|
4
|
4
|
3/4
|
3/4
|
2/2
|
4/4
|
1/2
|
1
|
|
CC-NBS-X
|
CNX
|
1
|
1
|
1/1
|
1/1
|
1/1
|
1/1
|
1/1
|
1
|
|
CC (related to CNL)
|
C
|
0
|
1
| | | | | | |
|
NBSCC
|
N
|
1
|
1
|
0/1
|
1/1
|
0/1
|
1/1
|
1/1
|
1
|
|
Total without LRRs
| |
43
|
58
| | | | | | |
|
Total
| | |
207
|
98/170
|
120/172
|
81/109
|
159/170
|
104/162
|
103
|
- a "CC" and "TIR" subscript indicates motifs predictive of a CC or TIR domain N-terminal to the NBS. The first four columns are from [7].
- b NBS-LRR-encoding and related genes for which RACE-PCR products were detected for either 5' or 3'end, or both.
- c Number called as present (P) or marginal (M) in one of the three control Col-0 samples collected 4 hours post treatment with 0.02% silwet (experiment described in [79]; additional file 1). ATH1 array was used for transcript profiling.
