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Table 6 Functional categories (GO) significantly biased in AFE-containing clusters in Rice.

From: Systematic analysis of alternative first exons in plant genomes

Enriched

GO category

AFE containing cluster

P-value

 

metabolism

468

0

 

cellular physiological process

595

0

 

nucleotide binding

155

0

 

hydrolase activity

144

0

 

transferase activity

131

0

 

oxidoreductase activity

79

0

 

ion binding

65

0

 

nucleic acid binding

147

1.02E-14

 

helicase activity

17

2.78E-09

 

catalytic activity

45

1.04E-08

 

lyase activity

24

1.95E-08

 

regulation of cellular process

50

3.95E-08

 

regulation of physiological process

50

4.25E-08

 

non-membrane-bound organelle

35

4.98E-08

 

ligase activity

32

6.29E-08

 

ATPase activity, coupled to movement of substances

20

7.01E-08

 

organelle part

35

7.38E-08

 

intracellular organelle part

35

7.38E-08

 

membrane

208

1.32E-07

 

carrier activity

27

2.15E-07

 

membrane part

32

1.24E-06

 

protein binding

26

1.66E-06

 

ion transporter activity

23

2.67E-06

 

ribonucleoprotein complex

23

1.38E-05

 

microtubule associated complex

7

2.78E-05

 

cell communication

22

3.91E-05

 

amine binding

6

4.49E-05

 

protein transporter activity

9

0.000192

 

response to endogenous stimulus

13

0.000197

 

unlocalized protein complex

5

0.000212

 

cofactor binding

6

0.000212

 

ATP-binding cassette (ABC) transporter complex

7

0.000245

 

ubiquitin ligase complex

18

0.000306

 

nuclear pore

3

0.000338

Depleted

membrane-bound organelle

860

1.47E-52

 

intracellular organelle

878

9.04E-47

 

intracellular part

905

4.36E-39

 

intracellular

911

7.83E-38

 

cell part

1,004

2.46E-33