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Table 6 Functional categories (GO) significantly biased in AFE-containing clusters in Rice.

From: Systematic analysis of alternative first exons in plant genomes

Enriched GO category AFE containing cluster P-value
  metabolism 468 0
  cellular physiological process 595 0
  nucleotide binding 155 0
  hydrolase activity 144 0
  transferase activity 131 0
  oxidoreductase activity 79 0
  ion binding 65 0
  nucleic acid binding 147 1.02E-14
  helicase activity 17 2.78E-09
  catalytic activity 45 1.04E-08
  lyase activity 24 1.95E-08
  regulation of cellular process 50 3.95E-08
  regulation of physiological process 50 4.25E-08
  non-membrane-bound organelle 35 4.98E-08
  ligase activity 32 6.29E-08
  ATPase activity, coupled to movement of substances 20 7.01E-08
  organelle part 35 7.38E-08
  intracellular organelle part 35 7.38E-08
  membrane 208 1.32E-07
  carrier activity 27 2.15E-07
  membrane part 32 1.24E-06
  protein binding 26 1.66E-06
  ion transporter activity 23 2.67E-06
  ribonucleoprotein complex 23 1.38E-05
  microtubule associated complex 7 2.78E-05
  cell communication 22 3.91E-05
  amine binding 6 4.49E-05
  protein transporter activity 9 0.000192
  response to endogenous stimulus 13 0.000197
  unlocalized protein complex 5 0.000212
  cofactor binding 6 0.000212
  ATP-binding cassette (ABC) transporter complex 7 0.000245
  ubiquitin ligase complex 18 0.000306
  nuclear pore 3 0.000338
Depleted membrane-bound organelle 860 1.47E-52
  intracellular organelle 878 9.04E-47
  intracellular part 905 4.36E-39
  intracellular 911 7.83E-38
  cell part 1,004 2.46E-33