Table 6 Functional categories (GO) significantly biased in AFE-containing clusters in Rice.
From: Systematic analysis of alternative first exons in plant genomes
| Enriched | GO category | AFE containing cluster | P-value |
|---|---|---|---|
| metabolism | 468 | 0 | |
| cellular physiological process | 595 | 0 | |
| nucleotide binding | 155 | 0 | |
| hydrolase activity | 144 | 0 | |
| transferase activity | 131 | 0 | |
| oxidoreductase activity | 79 | 0 | |
| ion binding | 65 | 0 | |
| nucleic acid binding | 147 | 1.02E-14 | |
| helicase activity | 17 | 2.78E-09 | |
| catalytic activity | 45 | 1.04E-08 | |
| lyase activity | 24 | 1.95E-08 | |
| regulation of cellular process | 50 | 3.95E-08 | |
| regulation of physiological process | 50 | 4.25E-08 | |
| non-membrane-bound organelle | 35 | 4.98E-08 | |
| ligase activity | 32 | 6.29E-08 | |
| ATPase activity, coupled to movement of substances | 20 | 7.01E-08 | |
| organelle part | 35 | 7.38E-08 | |
| intracellular organelle part | 35 | 7.38E-08 | |
| membrane | 208 | 1.32E-07 | |
| carrier activity | 27 | 2.15E-07 | |
| membrane part | 32 | 1.24E-06 | |
| protein binding | 26 | 1.66E-06 | |
| ion transporter activity | 23 | 2.67E-06 | |
| ribonucleoprotein complex | 23 | 1.38E-05 | |
| microtubule associated complex | 7 | 2.78E-05 | |
| cell communication | 22 | 3.91E-05 | |
| amine binding | 6 | 4.49E-05 | |
| protein transporter activity | 9 | 0.000192 | |
| response to endogenous stimulus | 13 | 0.000197 | |
| unlocalized protein complex | 5 | 0.000212 | |
| cofactor binding | 6 | 0.000212 | |
| ATP-binding cassette (ABC) transporter complex | 7 | 0.000245 | |
| ubiquitin ligase complex | 18 | 0.000306 | |
| nuclear pore | 3 | 0.000338 | |
| Depleted | membrane-bound organelle | 860 | 1.47E-52 |
| intracellular organelle | 878 | 9.04E-47 | |
| intracellular part | 905 | 4.36E-39 | |
| intracellular | 911 | 7.83E-38 | |
| cell part | 1,004 | 2.46E-33 |