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Table 5 Functional categories (GO) significantly biased in AFE-containing clusters in Arabidopsis

From: Systematic analysis of alternative first exons in plant genomes

 

GO category

AFE containing cluster

P-value*

Enriched**

cellular physiological process

327

0

 

metabolism

297

0

 

nucleotide binding

65

0

 

catalytic activity

27

1.52E-10

 

transferase activity

104

1.35E-09

 

ligase activity

25

1.73E-08

 

hydrolase activity

89

1.20E-07

 

ubiquitin ligase complex

13

1.24E-07

 

intracellular part

259

1.94E-07

 

intracellular

265

2.42E-07

 

cell part

368

7.82E-06

 

membrane part

37

4.80E-05

 

nucleic acid binding

91

0.000128

 

lyase activity

18

0.000265

 

localization

51

0.000476

Depleted

triplet codon-amino acid adaptor activity

0

5.61E-06

  1. * P-value was calculated by the hypergeometric distribution. The cutoff is 1E-5.
  2. ** "Enriched" categories refer to those containing significantly more genes (observed) than expected. "Depleted" categories refer to those containing significantly less genes (observed) than expected.
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BMC Plant Biology

ISSN: 1471-2229

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