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Table 5 Differentially-expressed genes from 93-11 leaf libraries confirmed by microarray data

From: Differential gene expression in an elite hybrid rice cultivar (Oryza sativa, L) and its parental lines based on SAGE data

Gene Model Tag Tag Number Ratiob Microarray Signal Annotations
   Na Pa La   Na Pa La  
Up-Regulated Tags (≥2-fold)
9311_Chr08_2156 GATTTGTATA 1 0 33 66.00 251 200 275 Plastocyanin-like
9311_Chr06_1523 TCATTTCAGT 2 0 14 14.00 3706 3473 6017 Major intrinsic protein
9311_Chr06_1142 ATCTGTTGCT 0 2 8 8.00 224 246 263 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
9311_Chr07_1712 GATCCGTCTC 13 0 47 7.23 1288 1238 2097 Thiamine biosynthesis Thi4 protein
9311_Chr06_1545 GTACTGTCTG 13 19 55 3.44 249 361 410 Ubiquitin
9311_Chr03_1401 TTCCCCCATT 11 4 22 2.93 261 150 263 Protein of unknown function DUF250
9311_Chr05_0842 CTGTATTACT 41 47 94 2.14 1030 994 1072 Calcium-binding EF-hand
Down-Regulated Tags (>2-fold)
9311_Chr11_0807 GAATATTGGA 0 43 3 7.17 854 1030 976 Sucrose synthase
9311_Chr10_2185 TATCATTACA 40 169 19 5.50 2536 3225 1968 Mitochondrial substrate carrier
9311_Chr07_1231 CACATAAATT 38 26 6 5.33 3539 1750 957 Photosystem I reaction centre subunit IV/PsaE
9311_Chr03_0009 TACATAGACA 23 66 11 4.05 667 681 659 Unknown
9311_Chr03_3682 ATTGCGGAAT 103 323 55 3.87 4577 5270 3054 Glycine hydroxymethyl transferase
9311_Chr01_4972 GATCGATGGG 4 53 8 3.56 239 747 504 Cellular retinaldehyde-binding)/triple function, C-terminal
9311_Chr03_3625 ACACTACAGT 2 36 6 3.17 203 401 245 Unknown
9311_Chr03_4144 CTTACAAGTG 25 58 14 2.96 929 947 655 Rieske [2Fe-2S] region
9311_Chr01_2088 GAGAGAGGGA 117 186 52 2.91 6807 7259 3098 Photosystem II manganese-stabilizing protein PsbO
9311_Chr12_1000 GATATATGGA 69 256 58 2.80 2501 2801 1201 Photosystem I reaction centre, subunit XI PsaL
9311_Chr04_3185 TAGTGATAAG 8 36 8 2.75 1563 1689 1217 Lipase, class 3
9311_Chr03_0940 ATCGCCGAGA 19 68 17 2.56 1520 2064 1220 Glutamine synthetase, beta-Grasp
9311_Chr01_4844 GTTAGCAAAA 11 17 6 2.33 2280 2985 1878 Calsequestrin
9311_Chr06_2649 AGGGAGGCCG 25 2 6 2.25 246 192 222 Heat shock protein DnaJ, N-terminal
  1. a P, N, and L stand for PA64s, 9311, and LYP9, respectively. b Ratios are calculated as ratio = L/[(P+N)/2] for up-regulated tags and [(P+N)/2]/L for down-regulated tags.