|
photosynthetic and chlororespiratory genes
|
ribosomal RNA genes
|
transfer RNA genes
|
|---|
| |
Nt
|
Cr
|
Cg
|
Ev
| |
Nt
|
Cr
|
Cg
|
Ev
| |
Nt
|
Cr
|
Cg
|
EV
|
|---|
|
atpA
|
+
|
+
|
+
|
Ψ
|
rrn16
|
+
|
+
|
+
|
+
|
trnA-ugc
|
+
|
+
|
Ψ
|
Ψ
|
|
atpB
|
+
|
+
|
+
|
Ψ
|
rrn23
|
+
|
+
|
+
|
+
|
trnC-gca
|
+
|
+
|
+
|
Ψ
|
|
atpE
|
+
|
+
|
+
|
-
|
rrn4.5
|
+
|
+
|
+
|
+
|
trnD-guc
|
+
|
+
|
+
|
+
|
|
atpF
|
+
|
+
|
+
|
-
|
rrn5
|
+
|
+
|
+
|
+
|
trnE-uuc
|
+
|
+
|
+
|
+
|
|
atpH
|
+
|
+
|
+
|
-
| | | | | |
trnF-gaa
|
+
|
+
|
+
|
+
|
|
atpI
|
+
|
+
|
+
|
-
| | | | | |
trnfM-cau
|
+
|
+
|
+
|
+
|
|
ndhA
|
+
|
-
|
-
|
-
| | | | | |
trnG-gcc
|
+
|
+
|
+
|
-
|
|
ndhB
|
+
|
Ψ
|
-
|
Ψ
|
RNA polymerase and maturase genes
|
trnG-ucc
|
+
|
+
|
Ψ
|
-
|
|
ndhC
|
+
|
-
|
-
|
-
| | | | | |
trnH-gug
|
+
|
+
|
+
|
+
|
|
ndhD
|
+
|
-
|
-
|
-
| | | | | |
trnI-cau
|
+
|
+
|
+
|
+
|
|
ndhE
|
+
|
-
|
-
|
-
| |
Nt
|
Cr
|
Cg
|
Ev
|
trnI-gau
|
+
|
+
|
Ψ
|
Ψ
|
|
ndhF
|
+
|
-
|
-
|
-
|
matK
|
+
|
+
|
-
|
+
|
trnK-uuu
|
+
|
-
|
-
|
-
|
|
ndhG
|
+
|
-
|
-
|
-
|
rpoA
|
+
|
+
|
-
|
Ψ
|
trnL-caa
|
+
|
+
|
+
|
+
|
|
ndhH
|
+
|
-
|
-
|
-
|
rpoB
|
+
|
+
|
-
|
-
|
trnL-uaa
|
+
|
+
|
+
|
-
|
|
ndhI
|
+
|
-
|
-
|
-
|
rpoC1
|
+
|
+
|
-
|
-
|
trnL-uag
|
+
|
+
|
+
|
+
|
|
ndhJ
|
+
|
-
|
-
|
-
|
rpoC2
|
+
|
+
|
-
|
-
|
trnM-cau
|
+
|
+
|
+
|
+
|
|
ndhK
|
+
|
-
|
-
|
-
| | | | | |
trnN-guu
|
+
|
+
|
+
|
+
|
|
petA
|
+
|
+
|
+
|
-
| | | | | |
trnP-ugg
|
+
|
+
|
+
|
+
|
|
petB
|
+
|
+
|
+
|
-
|
ribosomal protein and initiation factor genes
|
trnQ-uug
|
+
|
+
|
+
|
+
|
|
petD
|
+
|
+
|
+
|
-
| | | | | |
trnR-acg
|
+
|
+
|
Ψ
|
+
|
|
petG
|
+
|
+
|
+
|
-
| | | | | |
trnR-ucu
|
+
|
+
|
+
|
Ψ
|
|
petL
|
+
|
+
|
+
|
-
| |
Nt
|
Cr
|
Cg
|
Ev
|
trnS-gcu
|
+
|
+
|
+
|
+
|
|
petN
|
+
|
+
|
+
|
-
|
infA
|
Ψ
|
-
|
-
|
+
|
trnS-gga
|
+
|
+
|
+
|
Ψ
|
|
psaA
|
+
|
+
|
+
|
-
|
rpl14
|
+
|
+
|
+
|
Ψ
|
trnS-uga
|
+
|
+
|
+
|
+
|
|
psaB
|
+
|
+
|
+
|
-
|
rpl16
|
+
|
+
|
+
|
+
|
trnT-ggu
|
+
|
+
|
+
|
-
|
|
psaC
|
+
|
+
|
+
|
-
|
rpl2
|
+
|
+
|
+
|
+
|
trnT-ugu
|
+
|
+
|
+
|
-
|
|
psaI
|
+
|
+
|
-
|
-
|
rpl20
|
+
|
+
|
+
|
+
|
trnV-gac
|
+
|
+
|
+
|
-
|
|
psaJ
|
+
|
+
|
+
|
-
|
rpl22
|
+
|
+
|
+
|
-
|
trnV-uac
|
+
|
+
|
-
|
-
|
|
psbA
|
+
|
+
|
+
|
Ψ
|
rpl23
|
+
|
Ψ
|
-
|
Ψ
|
trnW-cca
|
+
|
+
|
+
|
+
|
|
psbB
|
+
|
+
|
+
|
Ψ
|
rp132
|
+
|
+
|
-
|
-
|
trnY-gua
|
+
|
+
|
+
|
+
|
|
psbC
|
+
|
+
|
+
|
-
|
rpl33
|
+
|
+
|
+
|
+
| | | | | |
|
psbD
|
+
|
+
|
+
|
-
|
rpl36
|
+
|
+
|
+
|
+
|
other protein genes
|
|
psbE
|
+
|
+
|
+
|
-
|
rps11
|
+
|
+
|
+
|
+
| |
Nt
|
Cr
|
Cg
|
Ev
|
|
psbF
|
+
|
+
|
+
|
-
|
rps12
|
+
|
+
|
+
|
+
|
clpP
|
+
|
+
|
+
|
+
|
|
psbH
|
+
|
+
|
+
|
-
|
rps14
|
+
|
+
|
+
|
+
|
accD
|
+
|
+
|
+
|
+
|
|
psbI
|
+
|
+
|
+
|
-
|
rps15
|
+
|
+
|
+
|
-
|
ycf1
|
+
|
+
|
+
|
+
|
|
psbJ
|
+
|
+
|
+
|
-
|
rps16
|
+
|
Ψ
|
-
|
-
|
ycf2
|
+
|
+
|
+
|
+
|
|
psbK
|
+
|
+
|
+
|
-
|
rps18
|
+
|
+
|
+
|
+
|
ycf3
|
+
|
+
|
+
|
-
|
|
psbL
|
+
|
+
|
+
|
-
|
rps19
|
+
|
+
|
+
|
+
|
ycf4
|
+
|
+
|
+
|
-
|
|
psbM
|
+
|
+
|
+
|
-
|
rps2
|
+
|
+
|
+
|
+
|
ycf5
|
+
|
+
|
+
|
-
|
|
psbN
|
+
|
+
|
+
|
-
|
rps3
|
+
|
+
|
+
|
+
|
ycf9
|
+
|
+
|
+
|
-
|
|
psbT
|
+
|
+
|
+
|
-
|
rps4
|
+
|
+
|
+
|
+
|
ycf10
|
+
|
+
|
+
|
-
|
|
rbcL
|
+
|
+
|
+
|
Ψ
|
rps7
|
+
|
+
|
+
|
+
|
ycf15
|
+
|
Ψ
|
Ψ
|
Ψ
|
| | | | | |
rps8
|
+
|
+
|
+
|
+
|
orf350
|
+
|
-
|
+
|
+
|
- +: gene present; -: gene deleted; pseudogenes are indicated by Ψ ; Nt: Nicotiana tabacum; Cr: Cuscuta reflexa; Cg: Cuscuta gronovii; Ev: Epifagus virginiana
