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Table 4 The frequency of different types of repeats in redundant EST-SSRs from the three genotypes NV#20F1-30, NV#20F1-39, and F6.

From: Frequency, type, and distribution of EST-SSRs from three genotypes of Lolium perenne, and their conservation across orthologous sequences of Festuca arundinacea, Brachypodium distachyon, and Oryza sativa

Repeat motif

Number of repeats

Total

%

 

4

5

6

7

8

9

10

>10

  

AC/GT

-

-

31

9

7

6

1

2

56

3.50

AG/CT

-

-

33

19

9

5

12

6

84

5.25

AT/AT

-

-

32

13

3

   

48

3.00

CG/CG

-

-

3

2

 

2

  

7

0.44

AAC/GTT

42

2

      

44

2.75

AAG/CTT

82

25

9

  

1

  

117

7.31

AAT/ATT

33

2

1

     

36

2.25

ACC/GGT

61

13

6

2

1

   

83

5.18

ACG/CGT

71

9

2

1

    

83

5.18

ACT/AGT

21

5

2

     

28

1.75

AGC/GCT

104

26

9

1

 

1

  

141

8.81

AGG/CCT

128

15

5

1

 

2

3

 

154

9.62

ATC/GAT

70

32

3

4

 

1

1

 

111

6.93

CCG/CGG

309

86

32

15

7

5

 

2

456

28.48

AAAG/CTTT

4

1

1

     

6

0.37

AAGG/CCTT

8

1

      

9

0.56

AATG/CATT

12

       

12

0.75

ACGC/GCGT

1

       

1

0.06

ACGG/CCGT

          

ACGT/ACGT

1

       

1

0.06

ACTC/GAGT

15

       

15

0.94

AGAT/ATCT

27

       

27

1.69

AGCC/GGCT

5

       

5

0.31

AGCG/CGCT

1

1

      

2

0.12

AGCT/AGCT

5

       

5

0.31

AGGG/CCCT

6

       

6

0.37

AGGT/ACCT

          

CCCG/CGGG

2

       

2

0.12

CCGG/CCGG

2

       

2

0.12

CATC/GATG

3

       

3

0.19

CTGC/GCAG

1

       

1

0.06

GATC/GATC

9

       

9

0.56

GCAT/ATGC

1

       

1

0.06

AACC/GGTT

1

1

      

2

0.12

AGTG/CACT

1

       

1

0.06

ATAC/GTAT

 

3

      

3

0.19

CCGA/TCGG

5

       

5

0.31

GATG/CATC

1

1

      

2

0.12

TATC/GATA

       

1

1

0.06

TGTA/TACA

 

2

 

3

    

5

0.31

AAGAG/CTCTT

1

       

1

0.06

TCCCA/TCCCA

1

       

1

0.06

TCGTC/GACGA

3

       

3

0.19

AGAGG/CCTCT

3

       

3

0.19

ATCGC/GCGAT

1

       

1

0.06

CCGCT/AGCGG

1

       

1

0.06

GCGAG/CTCGC

1

       

1

0.06

TGTCG/CGACA

3

       

3

0.19

CATGG/CCATG

1

       

1

0.06

GATCT/AGATC

1

       

1

0.06

GTGTT/AACAC

1

       

1

0.06

TGTGG/CCACA

1

       

1

0.06

AGAACA/TGTTCT

1

       

1

0.06

ACCTCC/GGAGGT

 

2

      

2

0.12

ACTCCT/AGGAGT

1

       

1

0.06

AGAGGC/GCCTCT

 

1

      

1

0.06

AGAGGG/CCCTCT

1

       

1

0.06

AGAGGT/ACCTCT

1

       

1

0.06

AGCTCC/GGAGCT

1

       

1

0.06

GAAGAG/CTCTTC

1

       

1

0.06