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Table 4 The frequency of different types of repeats in redundant EST-SSRs from the three genotypes NV#20F1-30, NV#20F1-39, and F6.

From: Frequency, type, and distribution of EST-SSRs from three genotypes of Lolium perenne, and their conservation across orthologous sequences of Festuca arundinacea, Brachypodium distachyon, and Oryza sativa

Repeat motif Number of repeats Total %
  4 5 6 7 8 9 10 >10   
AC/GT - - 31 9 7 6 1 2 56 3.50
AG/CT - - 33 19 9 5 12 6 84 5.25
AT/AT - - 32 13 3     48 3.00
CG/CG - - 3 2   2    7 0.44
AAC/GTT 42 2        44 2.75
AAG/CTT 82 25 9    1    117 7.31
AAT/ATT 33 2 1       36 2.25
ACC/GGT 61 13 6 2 1     83 5.18
ACG/CGT 71 9 2 1      83 5.18
ACT/AGT 21 5 2       28 1.75
AGC/GCT 104 26 9 1   1    141 8.81
AGG/CCT 128 15 5 1   2 3   154 9.62
ATC/GAT 70 32 3 4   1 1   111 6.93
CCG/CGG 309 86 32 15 7 5   2 456 28.48
AAAG/CTTT 4 1 1       6 0.37
AAGG/CCTT 8 1        9 0.56
AATG/CATT 12         12 0.75
ACGC/GCGT 1         1 0.06
ACGG/CCGT           
ACGT/ACGT 1         1 0.06
ACTC/GAGT 15         15 0.94
AGAT/ATCT 27         27 1.69
AGCC/GGCT 5         5 0.31
AGCG/CGCT 1 1        2 0.12
AGCT/AGCT 5         5 0.31
AGGG/CCCT 6         6 0.37
AGGT/ACCT           
CCCG/CGGG 2         2 0.12
CCGG/CCGG 2         2 0.12
CATC/GATG 3         3 0.19
CTGC/GCAG 1         1 0.06
GATC/GATC 9         9 0.56
GCAT/ATGC 1         1 0.06
AACC/GGTT 1 1        2 0.12
AGTG/CACT 1         1 0.06
ATAC/GTAT   3        3 0.19
CCGA/TCGG 5         5 0.31
GATG/CATC 1 1        2 0.12
TATC/GATA         1 1 0.06
TGTA/TACA   2   3      5 0.31
AAGAG/CTCTT 1         1 0.06
TCCCA/TCCCA 1         1 0.06
TCGTC/GACGA 3         3 0.19
AGAGG/CCTCT 3         3 0.19
ATCGC/GCGAT 1         1 0.06
CCGCT/AGCGG 1         1 0.06
GCGAG/CTCGC 1         1 0.06
TGTCG/CGACA 3         3 0.19
CATGG/CCATG 1         1 0.06
GATCT/AGATC 1         1 0.06
GTGTT/AACAC 1         1 0.06
TGTGG/CCACA 1         1 0.06
AGAACA/TGTTCT 1         1 0.06
ACCTCC/GGAGGT   2        2 0.12
ACTCCT/AGGAGT 1         1 0.06
AGAGGC/GCCTCT   1        1 0.06
AGAGGG/CCCTCT 1         1 0.06
AGAGGT/ACCTCT 1         1 0.06
AGCTCC/GGAGCT 1         1 0.06
GAAGAG/CTCTTC 1         1 0.06