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Table 3 QTLs detected by composite interval mapping in the RIL population from the cross 'E. tef × E. pilosa (30-5)'

From: QTL mapping of agronomic traits in tef [Eragrostis tef(Zucc) Trotter]

Traita

Chrom.

Closest locus/locib

Peakc

LOD

R2

Addd

Exp.e

HD

13

RZ251

 

4.47

0.16

0.01

e11

MD

2

RZ876 ~ RZ962c

RZ876

3.08

0.34

-1.70

e09, e10

 

8

PALb

 

3.42

0.20

-3.14

e11

PWt

2

RZ876 ~ RZ962c

RZ876

3.18

0.15

-0.06

e05

 

8

ISSR548a

 

3.97

0.15

-0.06

e06

 

10

TCD52

 

3.51

0.19

-0.08

e04

 

19

RZ698b

 

3.25

0.14

0.07

e01

 

20

RZ588

 

3.30

0.23

0.09

e07

PSWt

2

PALa

 

4.41

0.17

-0.10

e04

 

3

TCD95

 

3.80

0.21

-0.10

e09

 

7

ISSR811b ~ ISSR840a

ISSR811b

5.20

0.24

-0.12

e06, e10

 

8

ISSR548a

 

3.35

0.13

-0.07

e06

 

10

TCD52

 

3.99

0.27

-0.12

e04

 

13

RZ251

 

3.02

0.11

0.10

e08

 

18

ISSR840b

 

5.45

0.24

0.13

e04, e8

 

19

RZ698b

 

3.17

0.14

0.09

e01

 

20

RZ588

 

3.51

0.20

0.11

e07

100sw

6

RM170b

 

5.21

0.26

-2.22

e02, e03

 

10

ISSR842c ~ TCD327b

ISSR842c

6.23

0.21

-1.90

e03, e07

 

un

CNLT127-T04

 

5.25

0.21

-1.75

e05

 

un

KSUM222

 

5.78

0.30

-2.49

e01

GY

2

CNL53 ~ ISSR547

CNL53

4.06

0.11

-1.13

e04, e06, e08

 

2

BCD880

 

5.84

0.24

-1.47

e02

 

3

TCD248 ~ TCD95

TCD95

6.34

0.28

-1.07

e03, e05, e07, e09, e10, e11

 

3

PRSC1_022

 

3.98

0.12

-1.23

e01

 

6

TCD308 ~ ISSR842b

ISSR549b

6.36

0.20

-1.61

e08, e09

 

7

ISSR840a

 

5.94

0.25

-1.67

e01, e06, e10

 

8

TCD227a ~ ISSR548a

ISSR548a

4.88

0.15

-1.02

e04, e11

 

8

TCD323

 

4.92

0.15

-1.12

e02

 

16

RZ395 ~ RM134

RZ395

3.35

0.12

-0.59

e05, e09

 

18

ISSR840b

 

3.48

0.12

0.97

e07

 

20

RZ588

 

3.98

0.18

1.10

e06, e11

 

21

lfm256

 

5.03

0.14

-1.29

e05, e03

SB

2

BCD880

 

3.94

0.14

-2.33

e05

 

2

RZ962c

 

3.04

0.15

-2.40

e04

 

3

TCD248 ~ ISSR549a

ISSR549a

6.57

0.19

-1.63

e01, e02, e09, e10, e11

 

6

RM176 ~ ISSR549b

RM176

4.72

0.16

-2.39

e04, e05, e06, e08, e09

 

6

ISSR841b

 

3.13

0.11

-1.90

e03

 

7

CNLT145

 

4.60

0.26

-2.88

e03

 

8

ISSR548a ~ TCD323

ISSR548a

6.60

0.21

-2.28

e06, e11

 

10

TCD52 ~ CNLT78

 

6.32

0.26

-0.90

e07, e09

 

10

TCD327b

 

3.07

0.12

-1.97

e03

 

11

DupW4 ~ ISSR842e

DupW4

3.28

0.15

-1.42

e10, e11

 

20

RZ588

 

4.36

0.22

1.71

e10

Lodg

1

TCD99b

 

3.87

0.25

-6.12

e03

 

8

PALb

 

5.50

0.38

-7.12

e02

 

8

TCD323

 

5.53

0.23

-6.00

e05

 

un

BCD944a

 

5.68

0.32

-7.21

e05

 

un

TCD182a

 

4.90

0.23

-5.60

e02

CulmL

2

RZ876

 

3.67

0.23

-2.18

e02

 

3

TCD95

 

5.92

0.21

-2.28

e09, e10

 

6

RM170b

 

3.34

0.12

-1.92

e08

 

7

RM124b ~ CNLT145

CNLT145

3.44

0.34

-2.64

e02

 

8

ISSR548a

 

3.46

0.12

-1.49

e11

 

11

DupW4 ~ ISSR842e

ISSR842e

5.66

0.28

-2.16

e07, e09, e11

 

13

RZ251

 

3.32

0.24

2.20

e07, e08

 

un

KSUM222

 

3.57

0.22

-2.50

e01

CD1

2

RZ876 ~ RZ962c

RZ876

4.67

0.33

-0.12

e05

 

13

RZ251

 

3.39

0.21

0.09

e04

CD2

2

RZ876 ~ RZ962c

RZ876

4.86

0.33

-0.12

e05

PedL

1

CDO1160 ~ TCD45

CDO1160

4.23

0.19

-0.86

e07

 

3

RM170a

 

5.90

0.25

1.40

e08

 

7

CNLT145

 

3.17

0.11

-0.94

e08

 

9

ISSR842h

 

3.43

0.12

-0.68

e01

 

10

ISSR842c

 

5.35

0.21

1.08

e10

 

21

lfm256

 

3.72

0.11

0.78

e02, e04, e11

 

un

BCD944a

 

4.11

0.17

1.06

e04

 

un

CNLT12

 

4.05

0.17

0.98

e02, e03

 

un

DupW216

 

3.32

0.35

-1.12

e09

 

un

ISSR842d

 

3.16

0.17

1.00

e11

 

un

CNLT142-T03

 

3.50

0.13

0.72

e01

PanL

2

RZ876

 

3.36

0.11

-1.27

e03

 

6

RM176

 

3.52

0.10

-1.22

e03, e06

 

7

RM124b

 

3.92

0.14

-1.07

e10

 

8

ISSR548a ~ CD038

ISSR548a 4.73

0.14

-1.46

e03

 
 

13

RZ251

 

4.38

0.19

1.78

e05

 

20

RZ588

 

4.00

0.22

1.36

e07

 

un

ISSR842d

 

3.25

0.12

-0.98

e10

PH

2

RZ876 ~ RZ962c

RZ962c 3.63

0.26

-3.79

e01, e05

 
 

7

CNLT145

 

3.14

0.13

-3.26

e04

 

8

ISSR548a

 

4.35

0.14

-2.91

e03

 

20

RZ588

 

3.82

0.15

2.52

e07

Ninter

2

RZ876 ~ RZ962c

RZ962c 4.97

0.20

-0.11

e01, e02, e05

 
 

10

TCD52

 

4.61

0.16

-0.13

e04

 

un

ISSR842d

 

3.51

0.17

-0.11

e01

Inter1

13

RZ69 ~ RZ251

RZ69

4.20

0.22

0.62

e02

 

un

CNLT17

 

4.61

0.24

0.58

e02

 

un

CNLT142-T03

 

3.95

0.18

-0.30

e03, e07

 

un

RZ961

 

3.66

0.33

0.84

e04, e08

Inter2

1

RZ909a

 

4.30

0.14

-0.35

e07

 

3

TCD95 ~ ISSR549a

TCD95

4.72

0.21

-0.75

e06, e07

 

7

CNLT145

 

3.02

0.14

-0.57

e08

 

10

CNLT78

 

3.31

0.15

-0.51

e01

 

13

RZ467a ~ RZ69

RZ69

3.80

0.26

0.78

e01, e02

 

un

CNLT12

 

4.46

0.34

0.71

e02, e03

 

un

RZ961

 

3.53

0.16

0.38

e07

Dia

8

ISSR548a

 

3.11

0.15

-0.07

e03

Crush2

2

BCD1087a

 

3.08

0.14

0.49

 
 

8

ISSR548a

 

5.31

0.17

-0.48

 
  1. a See Methods, designations of each trait
  2. b Flanking markers within the significance threshold at each border of the QTL range in the most significant experiments
  3. c Peak marker is the marker closest to the peak LOD score if QTL covered more than two loci.
  4. d Positive value of additive effect (Add) means the increased effect for the QTL was caused by the E. pilosa (30-5) allele
  5. e See the legend of Table 1, designations of each experiment