Table 1 Description of identified sequences flanking the Lyc EPRVs. Numbers correspond to those shown in Fig.2A.

1.

Le1

Integrase ORF, Solanum demissum retrotransposon (AAT39954);

5431–5846

polyprotein ORF, S.lycopersicum retrotransposon (AAD13304); PCRT2-2, S.lycopersicum pericentromeric retrotransposon (AY850394);

5800–5968,

PCRT1c-1 S. lycopersicum pericentromeric retrotransposon (AY850394).

5477–5498

2.

Le3

Putative solo-LTR, UTRT3, tandem repeat (AC139840; AY850394).

1–797

3.

Le3

Putative DEAD/DEAH box, RNA helicase protein ORF, A. thaliana (AAO00880), O.sativa (AAN62787).

1237–1992

4.

Lh1

putative coding region, PCRT1b-3 S.lycopersicum pericentromeric retrotransposon (AY850394);

3879–4211,

putative coding region, Caterina-2 S.lycopersicum Ty3-gypsy retrotransposon (AY678298).

3901–4212

5.

Lh2

putative LTR, PCR1b S.lycopersicum pericentromeric retrotransposon (AY850394).

98–332

6.

Lh3

TNP2 like transposon protein (Tpase), class II transposon, O.sativa (AAM18727).

5925–5990

7.(a, b)

Lh4

LTR ends, inverted, PCRT1a S.lycopersicum pericentromeric retrotransposon (AY850394).

131–1076;

4868–6132

8.

Lh5

51bp repeat motif;

5870–6206

unclassified transposable element XC (AY678298);

6156–6171

unclassified transposable element XB (AY678298).

6218–6252

9.

Lh7

LTR end, PCRT1a (as in Lh4) S.lycopersicum pericentromeric retrotransposon (AY850394).

11–1257

10.

Lh7

not annotated pericentromeric repeat;

PCRT1b S.lycopersicum pericentromeric retrotransposon (AY850394).

8132–8988

11.

Lh8

PCTR1a S.lycopersicum pericentromeric retrotransposon (AY850394);

TGRII dispersed repetitive sequence (AY880062).

49–1000

12.

Lh8

Solo-LTR, PCRT1d & PCRT1g S.lycopersicum pericentromeric retrotransposon (AY850394);

not annotated sequences from pericentric heterochromatin;

6863–8656

root knot nematode resistence marker (DQ090954).

8108–8320

13.

Lh9

root knot nematode resistence marker (DQ090954);

S.habrochaites RGA marker sequence (AF534327).

414–716