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Table 1 Description of identified sequences flanking the Lyc EPRVs. Numbers correspond to those shown in Fig.2A.

From: Endogenous pararetroviral sequences in tomato (Solanum lycopersicum) and related species

No. Clone Description Position in clone
1. Le1 Integrase ORF, Solanum demissum retrotransposon (AAT39954); 5431–5846
   polyprotein ORF, S.lycopersicum retrotransposon (AAD13304); PCRT2-2, S.lycopersicum pericentromeric retrotransposon (AY850394); 5800–5968,
   PCRT1c-1 S. lycopersicum pericentromeric retrotransposon (AY850394). 5477–5498
2. Le3 Putative solo-LTR, UTRT3, tandem repeat (AC139840; AY850394). 1–797
3. Le3 Putative DEAD/DEAH box, RNA helicase protein ORF, A. thaliana (AAO00880), O.sativa (AAN62787). 1237–1992
4. Lh1 putative coding region, PCRT1b-3 S.lycopersicum pericentromeric retrotransposon (AY850394); 3879–4211,
   putative coding region, Caterina-2 S.lycopersicum Ty3-gypsy retrotransposon (AY678298). 3901–4212
5. Lh2 putative LTR, PCR1b S.lycopersicum pericentromeric retrotransposon (AY850394). 98–332
6. Lh3 TNP2 like transposon protein (Tpase), class II transposon, O.sativa (AAM18727). 5925–5990
7.(a, b) Lh4 LTR ends, inverted, PCRT1a S.lycopersicum pericentromeric retrotransposon (AY850394). 131–1076;
4868–6132
8. Lh5 51bp repeat motif; 5870–6206
   unclassified transposable element XC (AY678298); 6156–6171
   unclassified transposable element XB (AY678298). 6218–6252
9. Lh7 LTR end, PCRT1a (as in Lh4) S.lycopersicum pericentromeric retrotransposon (AY850394). 11–1257
10. Lh7 not annotated pericentromeric repeat;
PCRT1b S.lycopersicum pericentromeric retrotransposon (AY850394).
8132–8988
11. Lh8 PCTR1a S.lycopersicum pericentromeric retrotransposon (AY850394);
TGRII dispersed repetitive sequence (AY880062).
49–1000
12. Lh8 Solo-LTR, PCRT1d & PCRT1g S.lycopersicum pericentromeric retrotransposon (AY850394);
not annotated sequences from pericentric heterochromatin;
6863–8656
   root knot nematode resistence marker (DQ090954). 8108–8320
13. Lh9 root knot nematode resistence marker (DQ090954);
S.habrochaites RGA marker sequence (AF534327).
414–716