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Table 1 Frequencies of non-redundant SSR motifs with respect to repeat numbers and in total as detected with the software MISA in the Physcomitrella patens gene index.

From: Identification of genic moss SSR markers and a comparative analysis of twenty-four algal and plant gene indices reveal species-specific rather than group-specific characteristics of microsatellites

SSR Motif

Number of repeats

Total

 

5

6

7

8

9

10

11

12

13

14

≥15

 

AC/GT

n. d.

461

191

70

60

36

18

8

5

6

8

863

AG/CT

n. d.

308

150

99

59

38

41

39

38

43

88

903

AT/AT

n. d.

80

52

40

41

42

17

12

7

4

12

307

CG/CG

n. d.

19

2

1

-

-

-

-

-

-

-

22

AAC/GTT

72

27

17

14

6

1

-

1

-

-

-

138

AAG/CTT

104

42

28

24

23

3

4

-

1

-

-

229

AAT/ATT

34

24

18

11

7

4

3

-

1

-

-

102

ACC/GGT

76

38

9

-

-

-

-

-

-

-

-

123

ACG/CTG

102

33

13

8

1

2

-

-

-

1

-

160

ACT/ATG

24

8

3

-

5

1

-

-

-

-

-

41

AGC/CGT

123

52

18

11

3

1

2

-

-

-

1

211

AGG/CCT

144

46

27

9

2

-

-

-

-

-

-

228

AGT/ATC

51

12

2

3

1

-

1

-

-

1

-

71

CCG/CGG

8

1

2

1

-

-

-

-

-

-

-

12

AAAC/GTTT

16

11

5

1

2

-

-

-

-

-

-

35

AAAG/CTTT

8

1

-

-

-

-

1

-

-

-

-

10

AAAT/ATTT

40

18

5

-

-

-

-

-

1

-

-

64

AAGG/CCTT

5

2

2

2

1

-

-

-

-

-

-

12

ACAG/CTGT

4

5

-

1

1

-

-

-

-

-

-

11

ACAT/ATGT

6

5

4

-

1

-

-

-

-

-

-

16

ACTC/AGTG

24

12

2

1

-

-

-

-

-

-

-

39

AGAT/ATCT

3

3

3

1

-

-

-

-

-

-

-

10

AGGG/CCCT

7

1

4

-

-

-

-

-

-

-

-

12

Other NNNN

37

17

7

3

-

-

-

-

-

-

-

64

NN

n. d.

868

395

210

160

116

76

59

50

53

108

2095

NNN

738

283

137

81

48

12

10

1

2

2

1

1315

NNNN

150

75

32

9

5

-

1

-

1

-

-

273

NNNNN

32

7

-

-

-

-

-

-

-

-

-

39

NNNNNN

1

-

-

-

-

-

-

-

-

-

-

1

  1. n. d. = no data
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BMC Plant Biology

ISSN: 1471-2229

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