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Table 1 Summary of identified genes homologous to glycosyl hydrolase family 1 glucosidase

From: Analysis of rice glycosyl hydrolase family 1 and expression of Os4bglu12 β-glucosidase

Gene name BGI ID (AAAA...)a RGP GenBank IDc Gene locus ID/positione/Chrf Gene pattern Corresponding cDNAsg Number ESTsh Tissue librariesi Comment
Os1bglu1 02002143 (F) 02002142 (aa 110–189b) AP003217 (F) (BAD73293d) AP008207 (F) AP008207/17752382 bp-17760802 bp/chr 1 2 AK069177 (F) AK060988 (n) 13 sh, pn, wh-TL, 2 wk lf-ABF3  
Os1bglu2 02004130 (aa 1–105) 02004129 (aa 106–561) AP003570 (F) AP004331 (F) AP008207 (F) AP008207/34595732 bp-34582220 bp/chr 1 1 - 4 pn-FW, wh-TL, 35 d lf-Dr, 3 wk lf-Bl  
Os1bglu3 02004130 (F) 02004127 (aa 134–288) AP003570 (F) AP004331 (F) AP008207 (F) AP008207/34604232 bp-34599017 bp/chr 1 1 AK067934 (F?) AK063065 (n) 4 sh, 2 wk lf-ABF3, 3 wk lf-Bl  
Os1bglu4 02004468 (aa 1–414) 02004470 (aa 426–479) AP003349 (F) (BAD82183) AP003418 (F) (BAD82346) AP008207 (F) AP008207/38998348 bp-39003033 bp/chr 1 1 - 9 sh, pn-FW, pn-FW-Dr, 3 wk lf-Bl  
Os1bglu5 02004619 (F) AP003272 (F) (BAD87322) AP004330 (F) (BAD88178) AP008207 (F) AP008207/40834604 bp-40840341 bp/chr 1 1 AK070499 (F) AK119221 (F) 23 sh, st-IM, pn, pn-FW, wh-TL, wh-BT, wh-TF, 2 wk lf-AtJMT, lf-Dr, 3 wk lf-Ls  
Os3bglu6 02008013 (F) AC146619 (F) AP008209 (F) AP008209/5850657 bp-5844110 bp/chr 3 1 AY129294 (F) AK119546 (F) 14 sh, pn-FW, cl-Co, 3 wk lf-Bl  
Os3bglu7 02010831 (aa 1–99) 02006516 (aa 100–504) AC091670 (F) (AAX95519) AC133334 (F) (AAS07254) AP008209 (F) AP008209/28041529 bp-28037050 bp/chr 3 2 OSU28047(F)AK100165 (F) AK103027 (F) AK105026 (F) AK059920 (n) 326 cl, sh, rt-SD, st-IM, pn, pn-FW, wh-TL, cl-ABA, cl-NAA, cl-BAP, cl-Cd, cl-heat, cl-Co; sh-UV, sh-Co, 35 d lf-Dr, 3–4 wk rt-Sa, 2 wk lf-ABF3, 2 wk cl-HDAC1, 3 wk lf-Bl, lf-M-Bl bglu1 j
Os3bglu8 02010831 (F) AC091670 (F) (AAX95520) AC133334 (F) (AAS07251) AP008209 (F) AP008209/28050325 bp-28045526 bp/chr 3 2 AK120790 (F) AK105850 (n)AK059517 (n) 77 sh, pn, pn-FW, wh-TL, wh-TF, cl-BAP, sh-Co, 2 wk lf ABF3  
Os4bglu9 02014146 (F) AL731582 (F) AP008210 (F) AP008210/23697091 bp-23691010 bp/chr 4 1 AK066908 (F?) 11 sh, lf-IM, 3–4 wk rt-Sa  
Os4bglu10 02014151 (F) AL731582 (F) (CAE05481) AP008210 (F) AP008210/23708851 bp-23703582 bp/chr 4 1 AK065793 (F) AK062029 (F) AK073031 (n) AK068304 (n) 17 sh, lf-M, wh-TL, 2 wk lf ABF3, 2 wk lf- AtJMT, 3 wk lf-Bl  
Os4bglu11 02014151 (F) AL731582 (F) (CAE05482) AP008210 (F) AP008210/23717688 bp-23710742 bp/chr 4 1 - 4 sh-Co  
Os4bglu12 02014151 (F) AL731582 (F) (CAE05483) AP008210 (F) AP008210/23728066 bp-23723058 bp/chr 4 1 AK062776 (n) AK100820 (n) AK105375 (n) 30 cl, sh, 2 wk lf and rt, sp, wh-TL, wh-TF, 1 wk rt-Sa, sd-Co, pn-FW-Dr, 2 wk cl-HDAC1, 2 wk sd-Ph, 3 wk lf-Bl, lf-BT-Xa  
Os4bglu13 02014151 (F) 02014154 (aa 465–520) AL73182 (F) (CAE05485) AP008210 (F) AP008210/23742711 bp-23738108 bp/chr 4 1 AK070962 (F) 22 sh, pn, wh-TL, wh-TF, 3 wk lf-Wd, 3 wk lf-Bl, lf-M-Bl  
Os4bglu14 02014354 (F) AL606622 (F) (CAE03397) AP008210 (F) AP008210/25617791 bp-25613930 bp/chr 4 3 AK067841 (F) 1 sh  
Os4bglu15 02014355 AL606622 (n) (CAE003399) AP008210 (n) AP008210/25626016 bp-25623565 bp/chr 4 - - 0   Gene fragment, lacks exon 1–8
Os4bglu16 02014360 (aa 1–69) 02014359 (aa 70–516) AL606622 (F) (CAE54544) AL606659 (F) (CAE01908) AP008210 (F) AP008210/25631832 bp-25640157 bp/chr 4 3 AK066850 (F?) AK068772 (F?) 14 rt-SD, sh, pn, pn-FW, wh-TL, cl-Co, 3 wk rt-Sa, 3 wk lf-Bl, lf-M-Bl  
Os4bglu17 02014358 AL606622 (n) AL606659 (n) AP008210 (n) AP008210/25646002 bp-25648366 bp/chr 4 - - 0   Gene fragment lacks exon 9–13
Os4bglu18 02014362 (aa 1–46) 02014361 (aa 47–505) AL606622 (F) (CAE01910) AL606659 (F) (CAE54546) AP008210 (F) AP008210/25667349 bp-25654991 bp/chr 4 3 AK058333 (n) 10 sh, pn-FW, 3 wk lf-Bl  
Os5bglu19 02017035 (F) 02016858 (aa 1–272) AC121366 (F) (AAS79738) AC135927 (F) AC137618 (F) AP008211 (F) AP008211/17386160 bp-17389960 bp/chr 5 1 AK105546 (F?) 5 pn-FW, pn-FW-Dr, 2 wk lf- AtJMT, 3 wk lf-Wd  
Os5bglu20 02016859 (F) 02017035 (F) AC121366 (F) AC137618 (F) AP008211 (F) AP008211/17403620 bp-17407871bp/chr 5 1 AK120998 (F?) 0   
Os5bglu21 02016862 (F) AC121366 (F) AC137618 (F) AP008211 (F) AP008211/17421799 bp-17427364 bp/chr 5 1 - 0   
Os5bglu22 02016869 (F) 02016867 (aa 1–61) AC121366 (F) AC137618 (F) (AAV31358) AP008211 (F) AP008211/17450999 bp-17456012 bp/chr 5 1 AK071469 (F) 39 sh, lf-M, pn-FW, cl-BAP, cl-NAA, 3 wk lf-Ls, 3 wk lf-Bl, lf-M-Bl  
Os5bglu23 02016873 (F) 02016872 (aa 251–380) AC137618 (F?) AC104279 (F?) AP008211 (F?) AP008211/17470463 bp-17477059 bp/chr 5 3 - 0   AC137618 AC104279 AP008211 frameshift in exon 1
Os6bglu24 02019101 (F) AP003543 (F) (BAD61620) AP008212 (F) AP008212/12285539 bp-12280797 bp/chr 6 1 - 0   
Os6bglu25 02020792 (F) AP003766 (F) AP004797 (1–284) AP008212 (F) AP008212/28093582 bp-28097231 bp/chr 6 1 AK120488 (F?) AK068614 (F?) 4 sh, pn-FW, 3 wk lf-Bl  
Os7bglu26 02022575 (F) AP005182 (F) AP005184 (F) AP008213 (F) AP008213/27562097 bp-27564748 bp/chr 7 2 AK068499(F?) 30 cl, sh, 2 wk lf, pn, pn-FW, pn-RP, 3 wk lf-Bl  
Os8bglu27 02025921 (F) 02025924 (aa 403–499) AP005816 (F) (BAD10670) AP006049 (F) (BAC57391) AP008214 (F) AP 008214/25247245 bp-25243519 bp/chr 8 1 AK067001(F) AK067231 (F) AK120430 (F) 19 sh, wh-TF, lf-TF, pn-FW, sh-Co, 2 wk lf- AtJMT, 3 wk lf-Bl  
Os8bglu28 02025922 (F) AP006049 (F) (BAC57391) AP005816 (BAD10672) AP008214 (F) AP008214/25259660 bp-25253178 bp/chr 8 1 AK105908 (F) AK059210 (F) AK098938 (F) 12 cl, sh, 35 d lf-Dr  
Os9bglu29 02027760 (F) AC108758 (F) AC108762 (F) AP008215 (F) AP008215/18724216 bp-18720410 bp/chr 9 4 - 2 rt-SD  
Os9bglu30 02027762 (F) AC108758 (F) AC108762 (F) AP008215 (F) AP008215/18739405 bp-18736646 bp/chr 9 4 AY056828(F) AK066710 (F) AK104707 (n) AK061340 (n) 27 sh, 2 wk lf, lf-IM, st-IM, pn, pn-FW, wh-TL, sh-UV, 2 wk lf-ABF3 bglu2 j
Os9bglu31 02027832 (F) AC137594 (F) AP008215 (F) AP008215/19592828 bp-19587946 bp/chr 9 3 AK121679 (F) AK102869 (F), AK121935 (F?) 48 cl, sh, rt-SD, lf, pn-FW, pn-RP, isd, wh-TL, cl-NAA, cl-BAP, cl-Cd; 2 wk cl-HDAC1, sc-Ac, 3 wk lf-Ls  
Os9bglu32 02027836 (F) AC137594 (F) AP006752 (F) AP008215 (F) AP008215/19609411 bp-19606016 bp/chr 9 1 AK101420 (F?) 31 cl, sh, rt-SD, pn-FW, isd, wh-TL, wh-BT, wh-TF, pn-FW-Dr, 3 wk lf-Bl, lf-M-Bl  
Os9bglu33 02027845 (aa 1–399) 02027838 (aa 435–501) AC137594 (F) AP006752 (F) AP008215 (F) AP008215/19619402 bp-19614063 bp/chr 9 1 AK066336 (F) 4 sh, pn-FW, 3 wk lf-Bl  
Os10bglu34   AC074354 (F) (AAK9258) AE016959 (F) AP008216 (F) AP008216/8447928 bp-8449554 bp/chr 10 1 AK071372 (F) 1 pn  
Os11bglu35   AC134047 (F?) (AAY23259) AP008217 (F?) AP008217/4243306 bp-4245678 bp/chr 11 3 - 0   pseudogene
Os11bglu36 02033149 (F) AC135190 (F) AP008217 (F) AP008217/26778370 bp-26774474 bp/chr 11 - AJ491323 (F) AK119461 (F) AK067619 (F?) 11 sh, 1 wk lf-Sa, 3 wk lf-Bl, 3 wk lf-Ls,  
Os11bglu37 02030895 (F) - AAAA02030895/43041 bp-40310 bp/chr 11 1 - 0   Pseudogene has stop after aa 434
Os12bglu38 02034198 (F) 02034197 (aa 1–113) AL731785 (F) AL732381 (F) AP008218 (F) AP008218/13144002 bp-13146818 bp/chr 12 2 AK071058 (F) 11 sh, sp, pn-FW, pn-FW-Dr  
Osbglu39 02042985 (F) - AAA02042985 bp/1652–3025 bp/chr - 5 - 0   Intronless
Osbglu40 02048307 (n) - AAAA02048307/815 bp -3 bp/chr - 5 - 0   Intronless, lacks exon 10–13
  1. a contig number in Beijing Genome Institute (the number start with 'AAAA').
  2. baa means the length of gene where its CDS covers the given range of amino acid residues.
  3. c GenBank accession number. F means full length gene/cDNA, n is not.
  4. d annotated deduced β-glucosidase in GenBank.
  5. e chromosome location was determined by mapping of corresponding gene on the 12 rice chromosomes in GenBank.
  6. f Chr means the number of the chromosome onwhich the gene is located.
  7. gthe full-length cDNA clones of japonica rice databases (Kikuchi et al. [50])
  8. hNumber EST means number of ESTs that match each gene. EST sequences were retrieved from the dbEST section of NCBI GenBank by BLASTn search with gene sequences. They were inspected to ensure they matched the gene-coding region and their full files retrieved to determine cDNA library source tissue and clone number when necessary. The ESTs assigned to each gene had greater than 97% identity and no higher similarity with another gene.
  9. iThe type of library where the conrresponding ESTs were found. Tissues: cl: callus, isd: immature seed, lf: leaf, pn: panicle or flower, rt: root, sc: suspension culture, sh: shoot, sp: spikelet before heading, st: stem, wh: whole plant. Stages (capital letters): BT: booting, FW: flowering, IM: 3–5 leaf stage or immature stage, M: mature, RP: ripening, SD: seedling, TF: trefoil, TL: tillering, 1 wk: 1 week-old, 2 wk: 2 week-old, 3 wk: 3 week-old, 3–4 wk: 3–4 week-old, 35 d: 35 day-old Growth or stress conditions: Cd: Cadmium, Co: cold, Dr: drought, heat: heat, Sa: salt, UV: UV light, Wd: wound, ABA: abscissic acid, BAP: benzyl amino purine, NAA: naphthaleneacetic acid, Bl: blast infected, Ls: lession mimics, Ph: brown plant hopper infested, Xa: Xanthomonas oryzae induced, Ac: Acidovorax avenae infected, ABF3: ABA-responsive element binding TF3 overexpression, AtJMT: Arabidosis jasmonate carboxyl methyltransferase overexpression, HDAC1: histone deacetylase overexpression.
  10. j Opassiri et al. [24]