Table 4 Arabidopsis (At) and Populus (Pt) Clp protease gene models (S14 family in MEROPS) corresponding to the names given in the Clp phylogenetic tree.
Group | At name | At number | Populus Gene model | Pt number | Pt name |
|---|---|---|---|---|---|
ClpB | AtClpB1 | At1g74310 | estExt_Genewise1_v1.C_820051 | Pt742398 | PtClpB1 |
| Â | AtClpB2 | At2g25140 | estExt_Genewise1_v1.C_LG_VI2692 | Pt717883 | PtClpB2 |
| Â | AtClpB3 | At5g15450 | fgenesh4_pg.C_scaffold_3401000001 | Pt792165 | PtClpB3.1 |
| Â | Â | Â | eugene3.00041061 | Pt556348 | PtClpB3.2 |
| Â | AtClpB4 | At4g14670 | fgenesh4_pg.C_LG_XVII000457 | Pt778578 | PtClpB4 |
| Â | AtClpB5 | At1g07200 | gw1.I.864.1 | Pt172264 | PtClpB5.1 |
| Â | Â | Â | estExt_fgenesh4_pm.C_LG_IX0543 | Pt833234 | PtClpB5.2 |
| Â | Â | Â | grail3.0022012901 | Pt659508 | PtClpB5.3 |
| Â | Â | Â | grail3.0020020101 | Pt669488 | PtClpB5.4 |
| Â | Â | Â | grail3.0010001601 | Pt656256 | PtClpB5.5 |
ClpC | AtClpC1 | At5g50920 | eugene3.00120993 | Pt570340 | PtClpC1 |
| Â | AtClpC2 | At3g48870 | eugene3.00150843 | Pt575448 | PtClpC2 |
| Â | AtClpC3 | At3g53270 | gw1.278.9.1 | Pt281354 | PtClpC3.1 |
| Â | Â | Â | gw1.VI.1596.1 | Pt427924 | PtClpC3.2 |
ClpD | AtClpD | At5g51070 | fgenesh4_pg.C_LG_XII001082 | Pt773307 | PtClpD1 |
| Â | Â | Â | eugene3.00150893 | Pt575498 | PtClpD2 |
| Â | Â | Â | fgenesh4_pg.C_LG_XII001084 | Pt773309 | PtClpD3 |
| Â | Â | Â | fgenesh4_pg.C_scaffold_232000029 | Pt787878 | PtClpD4 |
| Â | Â | Â | fgenesh4_pg.C_scaffold_15088000001 | Pt794999 | PtClpD5 |
ClpF | AtClpF | At3g45450 | fgenesh4_pg.C_scaffold_14521000001 | Pt794891 | PtClpF1 |
| Â | Â | Â | fgenesh4_pg.C_LG_V001142 | Pt761090 | PtClpF2 |
| Â | AtClpN57710 | At5g57710 | grail3.0030025301 | Pt653660 | PtClpN57710.1 |
| Â | Â | Â | fgenesh4_pg.C_LG_X002263 | Pt770773 | PtClpN57710.2 |
| Â | Â | Â | eugene3.00080144 | Pt563549 | PtClpN57710.3 |
ClpP | AtClpP2 | At5g23140 | grail3.0026027701 | Pt650895 | PtClpP2.1 |
| Â | Â | Â | eugene3.00070756 | Pt562818 | PtClpP2.2 |
| Â | Â | Â | eugene3.33100002 | Pt590732 | PtClpP2.3 |
| Â | Â | Â | grail3.4268000201 | Pt678327 | PtClpP2.4 |
| Â | AtClpP3 | At1g66670 | gw1.IV.3459.1 | Pt198370 | PtClpP3 |
| Â | AtClpP4 | At5g45390 | eugene3.00030757 | Pt554124 | PtClpP4.1 |
| Â | Â | Â | gw1.29.348.1 | Pt434537 | PtClpP4.2 |
| Â | AtClpP5 | At1g02560 | estExt_fgenesh4_pm.C_LG_II0893 | Pt830458 | PtClpP5.1 |
| Â | Â | Â | estExt_Genewise1_v1.C_LG_XIV2274 | Pt731676 | PtClpP5.2 |
| Â | AtClpP6 | At1g11750 | estExt_Genewise1_v1.C_LG_IV0459 | Pt712936 | PtClpP6.1 |
| Â | Â | Â | estExt_fgenesh4_pg.C_LG_IX0507 | Pt821196 | PtClpP6.2 |
ClpR | AtClpR1 | At1g49970 | estExt_fgenesh4_pg.C_LG_IX0730 | Pt821289 | PtClpR1.1 |
| Â | Â | Â | gw1.I.4091.1 | Pt175491 | PtClpR1.2 |
| Â | Â | Â | eugene3.16840002 | Pt584851 | PtClpR1.3 |
| Â | AtClpR2 | At1g12410 | estExt_fgenesh4_pg.C_1270005 | Pt827867 | PtClpR2 |
| Â | AtClpR3 | At1g09130 | gw1.XIII.856.1 | Pt240607 | PtClpR3.1 |
| Â | Â | Â | eugene3.01330032 | Pt581876 | PtClpR3.2 |
| Â | AtClpR4 | At4g17040 | eugene3.01180098 | Pt580163 | PtClpR4 |
ClpS | AtClpS1 | At4g25370 | fgenesh4_pg.C_LG_XV001031 | Pt776603 | PtClpS1 |
| Â | AtClpS2 | At4g12060 | fgenesh4_pg.C_LG_XII001246 | Pt773471 | PtClpS2 |
| Â | Â | Â | gw1.127.5.1 | Pt266999 | PtClpS3 |
| Â | Â | Â | gw1.I.9317.1 | Pt180717 | PtClpS4 |
ClpT | AtClpT | At1g68660 | estExt_fgenesh4_pg.C_LG_X1165 | Pt822150 | PtClpT1 |
| Â | Â | Â | grail3.0010047002 | Pt656784 | PtClpT2 |
| Â | Â | Â | estExt_fgenesh4_pg.C_LG_VIII1289 | Pt820724 | PtClpT3 |
| Â | Â | Â | estExt_fgenesh4_pg.C_LG_X0879 | Pt822021 | PtClpT4 |
ClpX | AtClpX1 | At5g53350 | gw1.XV.374.1 | Pt250938 | PtClpX1 |
| Â | AtClpX2 | At5g49840 | gw1.XII.172.1 | Pt432413 | PtClpX2 |
| Â | AtClpX3 | At1g33360 | gw1.86.193.1 | Pt297302 | PtClpX3 |