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Table 4 Arabidopsis (At) and Populus (Pt) Clp protease gene models (S14 family in MEROPS) corresponding to the names given in the Clp phylogenetic tree.

From: Protease gene families in Populus and Arabidopsis

Group At name At number Populus Gene model Pt number Pt name
ClpB AtClpB1 At1g74310 estExt_Genewise1_v1.C_820051 Pt742398 PtClpB1
  AtClpB2 At2g25140 estExt_Genewise1_v1.C_LG_VI2692 Pt717883 PtClpB2
  AtClpB3 At5g15450 fgenesh4_pg.C_scaffold_3401000001 Pt792165 PtClpB3.1
    eugene3.00041061 Pt556348 PtClpB3.2
  AtClpB4 At4g14670 fgenesh4_pg.C_LG_XVII000457 Pt778578 PtClpB4
  AtClpB5 At1g07200 gw1.I.864.1 Pt172264 PtClpB5.1
    estExt_fgenesh4_pm.C_LG_IX0543 Pt833234 PtClpB5.2
    grail3.0022012901 Pt659508 PtClpB5.3
    grail3.0020020101 Pt669488 PtClpB5.4
    grail3.0010001601 Pt656256 PtClpB5.5
ClpC AtClpC1 At5g50920 eugene3.00120993 Pt570340 PtClpC1
  AtClpC2 At3g48870 eugene3.00150843 Pt575448 PtClpC2
  AtClpC3 At3g53270 gw1.278.9.1 Pt281354 PtClpC3.1
    gw1.VI.1596.1 Pt427924 PtClpC3.2
ClpD AtClpD At5g51070 fgenesh4_pg.C_LG_XII001082 Pt773307 PtClpD1
    eugene3.00150893 Pt575498 PtClpD2
    fgenesh4_pg.C_LG_XII001084 Pt773309 PtClpD3
    fgenesh4_pg.C_scaffold_232000029 Pt787878 PtClpD4
    fgenesh4_pg.C_scaffold_15088000001 Pt794999 PtClpD5
ClpF AtClpF At3g45450 fgenesh4_pg.C_scaffold_14521000001 Pt794891 PtClpF1
    fgenesh4_pg.C_LG_V001142 Pt761090 PtClpF2
  AtClpN57710 At5g57710 grail3.0030025301 Pt653660 PtClpN57710.1
    fgenesh4_pg.C_LG_X002263 Pt770773 PtClpN57710.2
    eugene3.00080144 Pt563549 PtClpN57710.3
ClpP AtClpP2 At5g23140 grail3.0026027701 Pt650895 PtClpP2.1
    eugene3.00070756 Pt562818 PtClpP2.2
    eugene3.33100002 Pt590732 PtClpP2.3
    grail3.4268000201 Pt678327 PtClpP2.4
  AtClpP3 At1g66670 gw1.IV.3459.1 Pt198370 PtClpP3
  AtClpP4 At5g45390 eugene3.00030757 Pt554124 PtClpP4.1
    gw1.29.348.1 Pt434537 PtClpP4.2
  AtClpP5 At1g02560 estExt_fgenesh4_pm.C_LG_II0893 Pt830458 PtClpP5.1
    estExt_Genewise1_v1.C_LG_XIV2274 Pt731676 PtClpP5.2
  AtClpP6 At1g11750 estExt_Genewise1_v1.C_LG_IV0459 Pt712936 PtClpP6.1
    estExt_fgenesh4_pg.C_LG_IX0507 Pt821196 PtClpP6.2
ClpR AtClpR1 At1g49970 estExt_fgenesh4_pg.C_LG_IX0730 Pt821289 PtClpR1.1
    gw1.I.4091.1 Pt175491 PtClpR1.2
    eugene3.16840002 Pt584851 PtClpR1.3
  AtClpR2 At1g12410 estExt_fgenesh4_pg.C_1270005 Pt827867 PtClpR2
  AtClpR3 At1g09130 gw1.XIII.856.1 Pt240607 PtClpR3.1
    eugene3.01330032 Pt581876 PtClpR3.2
  AtClpR4 At4g17040 eugene3.01180098 Pt580163 PtClpR4
ClpS AtClpS1 At4g25370 fgenesh4_pg.C_LG_XV001031 Pt776603 PtClpS1
  AtClpS2 At4g12060 fgenesh4_pg.C_LG_XII001246 Pt773471 PtClpS2
    gw1.127.5.1 Pt266999 PtClpS3
    gw1.I.9317.1 Pt180717 PtClpS4
ClpT AtClpT At1g68660 estExt_fgenesh4_pg.C_LG_X1165 Pt822150 PtClpT1
    grail3.0010047002 Pt656784 PtClpT2
    estExt_fgenesh4_pg.C_LG_VIII1289 Pt820724 PtClpT3
    estExt_fgenesh4_pg.C_LG_X0879 Pt822021 PtClpT4
ClpX AtClpX1 At5g53350 gw1.XV.374.1 Pt250938 PtClpX1
  AtClpX2 At5g49840 gw1.XII.172.1 Pt432413 PtClpX2
  AtClpX3 At1g33360 gw1.86.193.1 Pt297302 PtClpX3