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Table 4 Allelic diversity and proportion of loci in linkage disequilibrium in the four clusters inferred using Structure (n = 346).

From: Microsatellite diversity and broad scale geographic structure in a model legume: building a set of nested core collection for studying naturally occurring variation in Medicago truncatula

Cluster Number of individuals N A HE (SE) Number of pairs of loci in LD (# of comparisons)
Whole sample 346 20.7 0.747 (0.300) 29 (78)
1 83 12.8 0.699 (0.277) 4 (77)
2 99 13.9 0.696 (0.287) 4 (78)
3 114 13.1 0.680 (0.308) 1 (78)
4 50 11.0 0.741 (0.291) 5 (75)
  1. Clusters 1 to 4 refer respectively to red, blue, yellow and green symbols in Figure 1.
  2. Pairs of markers where considered in significant LD using the threshold α = 0.05 after using a sequential Bonferroni correction