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Table 6 Transcription factors.

From: Comprehensive transcriptional profiling of NaCl-stressed Arabidopsis roots reveals novel classes of responsive genes

  number of genes
family, group, or pathway in genome on array signal above bkgnd. > 2 fold up > 2 fold down assignment to STEM profiles (Fig. 2) cluster:# of genes
ALFIN* 7 7 4 0 3 i:3
AP2/EREBP* 146 138 76 50 6 a:8;b:31;c:6;d:3;e:1; f:2;h:1;i:1;j:1;k:1;l:1; o:2
ARF* 23 20 12 4 0 a:3;d:1;f:1
AS2* 42 39 15 7 3 a:2;b:1;c:3;g:1;i:2;j:1; p:1
AUX/IAA 29 28 15 7 1 a:4;b:3;d:1;f:1;i:1;j:1
B3 39 36 8 2 2 a:1;b:1;i:2
bHLH 163 148 62 15 14 a:8;b:4;c:3;d:1;h:1;i:7; j:4;k:2;o:1;p:1
bZIP 75 68 42 11 11 a:5;b:5;c:2;i:3;j:4;l:1; o:2;p:1
C2C2-co-like* 31 31 13 5 2 b:1;d:1;e:1;f:2;i:1;j:1
C2C2-DOF* 36 31 15 8 1 b:5;c:1;d:2;g:1;k:1
C2C2-GATA* 29 27 14 3 3 b:3;d:2;h:1;i:1;j:1
C2H2* 130 122 57 22 14 a:5;b:15;c:1;d:1;f:1; i:5;j:6;o:2
C3H 33 31 13 5 2 a:1;b:3;c:1;j:1;n:1
CCAAT-HAP2 10 10 5 3 0 b:2;l:1
CCAAT-HAP3 11 11 7 2 2 a:2;i:1;j:1
CCAAT-HAP5 13 12 5 3 1 a:1;c:1;f:1;o:1
GARP-ARR-BARR19 12 12 4 1 1 b:1
GARP-G2-like* 43 43 26 8 8 b:4;c:1;d:3;f:1;i:3; j:4
GeBP 16 14 4 0 0 n/a
GRAS* 32 30 14 4 5 b:1;c:1;d:1;i:2;j:2;p:1
HB* 94 92 40 15 3 a:3;b:9;d:1;e:1;f:2;i:1; j:1;l:2;m:1
HMG 10 8 5 0 4 i:1;j:2;n:1
HSF* 24 23 13 10 1 a:6;b:4;d:1
JUMONJI 13 13 4 2 0 a:1;b:1;d:1
LIM 6 6 4 0 3 h:1;j:2;o:1
MADS 107 96 17 2 7 a:1;f:1;i:2;j:3;o:1
MYB* 203 188 84 33 12 a:9;b:18;c:1;d:5;f:2;i:3; j:5;n:1;o:1
NAC* 113 107 47 26 7 a:9;b:10;c:1;d:1;e:1;f:2; g:1;j:4;o:2
Nin-like 14 14 6 0 2 j:2
PHD 11 10 4 1 1 b:1;i:1
PLATZ* 9 8 5 2 0 b:2
SBP 16 15 8 3 1 a:1;b:2;i:1
TAZ 9 9 4 2 0 b:1;d:1;f:1
TCP 24 23 5 0 0 d:1
Trihelix 28 28 15 3 5 a:1;b:2;i:3;j:1;n:1
TUB 11 10 6 1 2 a:1;i:2
WRKY* 72 65 35 18 8 a:4;b:10;c:2;d:2;i:4; j:2;l:1
ZF-HD 15 15 6 1 2 d:1;j:2
ZIM* 15 12 10 8 1 b:3;c:3;d:1;f:1;o:1
  1. Groups of genes that are significantly enriched in at least one STEM profile at a FDR of < 5% are marked with an asterisk (*). The final column details the frequency of assignment of individual genes to specific STEM profiles identified by corresponding letters in Figure 2. Functional categories in this table are defined according to the Database of Arabidopsis Transcription Factors [81]. The following small transcription factor families, which are each represented by probes for three or fewer genes on the microarray, are not listed in this table: ARID, BES1, C2C2-YABBY, CAMTA, CCAAT-DR1, CPP, E2F/DPE2FC, EIL, FHA, GIF, GRF, HRT-like, LFY, LUG, MBF1, NZZ, PBF-2-like(Whirly), PcG, S1Fa-like, SAP, SRS, ULT, VOZ.