Table 3 NaCl-responsive transcripts related to respiration and carbohydrate and cell wall metabolism.
| Â | number of genes | |||||
|---|---|---|---|---|---|---|
family, group, or pathway | in genome | on array | signal above bkgnd. | > 2 fold up | > 2 fold down | assignment to STEM profiles (Fig. 2) cluster:# of genes |
glycolysis* | 70 | 64 | 45 | 6 | 10 | a:2;b:1;d:1;f:1;h:2; i:3;j:5;k:3 |
tricarboxylic acid cycle | 56 | 52 | 34 | 6 | 11 | a:4;b:1;f:1;g:1; i:4;j:7 |
mitochondrial respiration* | 95 | 66 | 55 | 0 | 26 | g:1;i:2;j:23;o:1 |
non-oxidative pentose phosphate pathway | 13 | 12 | 8 | 1 | 6 | h:1;i:1;j:3;k:1;o:1 |
oxidative * pentose phosphate pathway | 19 | 19 | 13 | 0 | 5 | i:3;j:1;k:1 |
glycosyltransferase* | 279 | 269 | 113 | 29 | 26 | a:12;b:8;c:2;d:4;f:3; g:2;h:1;i:10;j:10;k:1; l:1;n:1;o:3 |
glycoside hydrolase (GH)* | 306 | 289 | 121 | 42 | 27 | a:17;b:16;c:1;d:4;e:3; h:2;i:11;j:6;k:2;l:2;o:3; p:1 |
   GH family 16* | 27 | 26 | 14 | 10 | 2 | a:4;b:4;d:1;e:1;j:1; o:1 |
   GH family 28* | 52 | 46 | 10 | 4 | 1 | a:3;b:1;d:1 |
expansins | 35 | 32 | 21 | 7 | 4 | a:1;b:3;c:1;d:2;i:3; m:1 |
lignification (exclusive of 4-CL like and COMT-like) | 39 | 36 | 20 | 3 | 7 | a:1;c:1;d:1;i:1;j:5; o:1 |
4CL-like* | 9 | 8 | 3 | 2 | 1 | b:1;d:1;k:1 |
COMT-like* | 13 | 12 | 5 | 5 | 0 | a:1;b:3 |
lipid transfer protein* | 70 | 64 | 31 | 5 | 15 | a:3;b:1;h:1;i:1;j:8; k:2;n:2;o:2 |