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Table 1 Characteristics of the GS 20 combined run data assemblies

From: Rapid and accurate pyrosequencing of angiosperm plastid genomes

 

Nandina

Platanus

combined run data length

130503 bp

136335 bp

no. of combined data contigs

8

10

average contig length

16313 bp

13634 bp

size of largest contig

35901 bp

28803 bp

total no. of reads

31019

23743

average read length

103.6 bp

99.8 bp

overall average read depth (incl. one IR)

24.6×

17.3×

overall average read depth (incl. both IRs)

20.5×

14.6×

IR average read depth

24.2×

28.2×

SC average read depth

24.7×

14.9×

proportion of bases ≥ Q40

99.8%

99.4%

no. of gaps

9

11

total gap length

34 bp

390 bp

average gap length

3.8 bp

35.5 bp

no. of zero-length gaps

7

5

size of largest gap

32 bp

170 bp

  1. Characteristics of the GS 20 combined run data assemblies. The overall average read depth is calculated in two ways: by including one copy of the inverted repeat (IR) region (to reflect the fact that the two copies of the IR are indistinguishable during genome sequencing, and are therefore contigged together) and by including both copies of the IR region. SC = single-copy region.