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Table 1 Homology between the Fragaria × ananassa unigene sequences in public database as inferred through comparisons to Genbank nr, SWISSPROT, Rosaceae ESTs and mapped peach ESTs.

From: Expressed sequence tags (ESTs) and simple sequence repeat (SSR) markers from octoploid strawberry (Fragaria × ananassa)

 

nr.pep.11

sprot.fas1

Rosaceae ESTs2

mapped peach ESTs2

database size

2321663

153871

227250

256

total # sequences

1304

1304

1304

1304

# sequences with matches

1105

714

835

22

% sequences with matches

84.74%

54.75%

64.03%

1.69%

# sequences w/o matches

199

590

469

1282

% sequences w/o matches

15.26%

45.25%

35.97%

98.31%

  1. 1 FASTX3.4 Algorithm with cut-off of < 1e-6
  2. 2 BLASTN Algorithm with identity >= 85% and overlap > = 100