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Table 1 Homology between the Fragaria × ananassa unigene sequences in public database as inferred through comparisons to Genbank nr, SWISSPROT, Rosaceae ESTs and mapped peach ESTs.

From: Expressed sequence tags (ESTs) and simple sequence repeat (SSR) markers from octoploid strawberry (Fragaria × ananassa)

  nr.pep.11 sprot.fas1 Rosaceae ESTs2 mapped peach ESTs2
database size 2321663 153871 227250 256
total # sequences 1304 1304 1304 1304
# sequences with matches 1105 714 835 22
% sequences with matches 84.74% 54.75% 64.03% 1.69%
# sequences w/o matches 199 590 469 1282
% sequences w/o matches 15.26% 45.25% 35.97% 98.31%
  1. 1 FASTX3.4 Algorithm with cut-off of < 1e-6
  2. 2 BLASTN Algorithm with identity >= 85% and overlap > = 100
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