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Table 1 Fifty A. thaliana gene families Gene family names or typical gene annotations are given in the first column. The second column contains abbreviated names or mnemonics for the families. Unnamed gene families are given PIR family numbers (e.g. HypProt131). The third column indicates the number of predicted gene sequences included in final A. thaliana gene family phylogenies.

From: The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana

Annotation Short Name Seqs
calcineurin-like phosphoesterase CalcinPEst 19
calmodulin Calmod 79
cation/hydrogen exchanger CatHydExch 28
chlorophyll a/b-binding ChlABBP 21
cysteine proteinase CystProt 31
cytochrome P450 CytP450 225
Enod16 Enod16 32
Enod18/ER6 protein Enod18_ER6 29
exocyst subunit EXO70 ExocystEX070 23
expansin Expansin 34
FAD-linked oxidoreductase FADOxidor 27
flavin-containing monooxygenase FlavMonoOx 28
germin-like Germin 30
glutathione transferase; dehydroascorbate reductase GlutTnsfs 50
glycosyl hydrolase family 1 GlycosHdls 47
glycosyltransferase family 8 GlyTnsf8 24
glycosyl hydrolase family 9 GlyTnsf9 25
auxin-independent growth promoter GrthRegul 33
GDSL-motif lipase/hydrolase GSDLLipase 97
GTP-binding; Ras-related GTP-binding GTPBP 72
acyltransferase HBenzTnsfs 57
heat shock transcription factor HtShkTncFct 20
hypothetical HypProt131 28
hypothetical; esterase-like HypProt2752 23
hypothetical HypProt317 42
hypothetical HypProt536 25
hypothetical HypProt688 21
lysine/histidine transporter; amino acid permease KHTnsptr 22
major intrinsic protein (MIP) family MajIntrinsProt 38
MATE MATE 50
mitochondrial carrier MCP 57
MFS MFS 68
major latex protein (MLP)-related; Bet v I allergen MLP 25
MYB transcription factor MYB 120
NBS-LRR disease resistance NBSLRR 152
oxidoreductase; 20G-Fe(II) oxygenase Oxidored 95
pathogenesis-related protein 1 PathRelPr1 22
phosphoprotein phosphatase; ser/thr phosphatase PhosphPtase 26
phototropic response protein PhotResp 30
phosphatidylinositol/phophatidylcholine transfer prot. PIPCTP 30
plastocyanin-like domain; blue copper p.; Enod 20 PlastocEn20 37
polygalacturonase Polygalns 65
oligopeptide transport POT 48
proteasome alpha and beta subunits PsomeAB 23
short-chain dehydrogenase/reductase SCDehydRed 84
subtilisin-like serine protease SubtilisinSP 53
thaumatin-like Thaumatin 22
UDP-glycosyltransferase UDPGlycTnsf 109
WRKY transcription factor WRKY 55
xyloglucan endotransglycosylase XyloTGlyc 33