ARACNe-based inference, using curated microarray data, of Arabidopsis thaliana root transcriptional regulatory networks

Table 3 List of ANAC030 / VND7 interactors in the FullNet obtained at DPI 0.0

Locus	Symbol	Short description	MI	p-value	Target gene
AT3G62160		HXXXD-type acyl-transferase family protein	0.421448	1e-70	yes^a
AT5G60720		Protein of unknown function, DUF547	0.376219	1e-60	yes^abcd
AT1G32100	ATPRR1	Pinoresinol reductase 1	0.375341	1e-60	no
AT1G01900	ATSBT1.1	Subtilase family protein	0.375002	1e-60	yes^bcd
AT1G54790		GDSL-like lipase/acylhydrolase superfamily protein	0.364787	1e-60	yes^abcd
AT2G04850		Auxin-responsive family protein	0.363144	1e-60	yes^acd
AT3G27200		Cupredoxin superfamily protein	0.362569	1e-60	yes^abcd
AT2G27740		Family of unknown function, DUF662	0.328449	1e-50	yes^c
AT5G01930		Glycoside hydrolase, family 5	0.324593	1e-50	yes^acd
AT1G47410		Unknown protein	0.293837	1e-50	yes^c
AT5G59845		Gibberellin-regulated family protein	0.27815	1e-50	yes^ac
AT5G38610		Plant invertase/pectin methylesterase inhibitor superfamily protein	0.27147	1e-40	yes^abcd
AT5G26330		Cupredoxin superfamily protein	0.252517	1e-40	yes^a
AT1G24600		Unknown protein	0.243778	1e-40	yes^acd
AT4G39320		Microtubule-associated protein-related	0.188269	1e-30	yes^c
AT2G31085	CLE6	CLAVATA3/ESR-RELATED 6	0.180814	1e-30	no

MI: mutual information value.
The target gene column indicates if the gene is an experimentally identified target gene in [60]^(a), [61]^(b), an upregulated gene in [62]^(c) or a putative direct target gene in [62]^(d).

ISSN: 1471-2229