Conserved CO-FT regulons contribute to the photoperiod flowering control in soybean

BMC Plant Biology

Table 1 Collinear relationships of homologous blocks containing CO or FT orthologs in soybean

Gene 1	Block 1			Gene 2	Block 2			Averange Ks
Gene 1	Chr.	Start1 (bp)	Stop1 (bp)	Gene 2	Chr.	Start2 (bp)	Stop2 (bp)	Averange Ks
GmCOL1	GM08	20,564,643	23,533,251	GmCOL2	GM18	59,120,324	60,758,130	0.1804
GmCOL1	GM08	22,488,108	22,903,468	GmCOL5	GM13	7,094,033	7,353,077	0.7170
GmCOL1	GM08	22,268,496	22,705,283	GmCOL13	GM19	5,037,623	5,784,423	0.7074
GmCOL2	GM18	59,759,300	60,359,904	GmCOL5	GM13	6,762,198	7,353,077	0.6861
GmCOL2	GM18	59,768,883	60,286,871	GmCOL13	GM19	4,269,582	5,784,423	0.6852
GmCOL5	GM13	4,686,036	7,380,393	GmCOL13	GM19	1,047,196	6,070,543	0.2339
GmFTL7	GM02	3,884,100	7,368,892	GmFTL3, 5	GM16	26,025,808	32,876,516	0.2402
GmFTL7	GM02	5,819,578	6,251,781	GmFTL2, 6	GM19	35,107,064	36,353,817	1.020
GmFTL7	GM02	6,298,304	5,732,540	GmFTL1, 4	GM16	3,729,118	5,022,006	0.8591
GmFTL3, 5	GM16	30,464,871	31,024,893	GmFTL2, 6	GM19	35,107,064	36,353,817	0.9123
GmFTL3, 5	GM16	30,321,165	31,089,979	GmFTL1, 4	GM16	5,016,992	9,730,561	0.7530
GmFTL2, 6	GM19	27,993,447	37,257,559	GmFTL1, 4	GM16	6,662,519	3,315,381	0.2702

Note: The homologous blocks, containing CO or FT orthologs, were gained by MCScanX. Average Ks values of homologous blocks were the mean of Ks values of paralogous gene pairs in blocks.

ISSN: 1471-2229