From: Identification and characterization of nuclear genes involved in photosynthesis in Populus
Trait | Gene symbol | Locus | Missense mutation | P-value | Phenotypic variation (%) | FDR | Frequency (%) | |
---|---|---|---|---|---|---|---|---|
Pn | XET 5′UTR | XET-SNP2 |  | < 0.001 | 5.4 | 0.0003 | 0.48 | (G) |
XET 5′UTR | XET-SNP3 |  | < 0.001 | 7.2 | 0.0006 | 0.41 | (T) | |
XET Exon1 | XET-SNP5 | Leu to Pro | < 0.001 | 5.2 | 0.0012 | 0.41 | (C) | |
XET Exon1 | XET-SNP6 | Ala to Pro | < 0.001 | 5.4 | 0.0009 | 0.38 | (C) | |
Dabb Exon2 | Dabb-SNP2 | Ala to Val | 0.001 | 4.8 | 0.0019 | 0.45 | (T) | |
GASA 3′UTR | GASA-SNP3 |  | < 0.001 | 8.0 | < 0.0001 | 0.46 | (C) | |
SAUR Exon | SAUR-SNP1 | Glu to Gln | 0.008 | 2.3 | 0.0158 | 0.26 | (G) | |
CGSS Exon1 | CGSS-SNP1 | Met* to Val | < 0.001 | 7.0 | < 0.0001 | 0.15 | (G) | |
Cond | XET 5′UTR | XET-SNP3 |  | < 0.001 | 7.9 | < 0.0001 | 0.41 | (T) |
XET Exon1 | XET-SNP6 | Ala to Pro | < 0.001 | 5.9 | 0.0005 | 0.38 | (C) | |
Dabb Exon2 | Dabb-SNP2 | Ala to Val | < 0.001 | 7.0 | < 0.0001 | 0.45 | (T) | |
GASA 3′UTR | GASA-SNP3 |  | < 0.001 | 12.6 | < 0.0001 | 0.46 | (C) | |
SAUR Exon | SAUR-SNP1 | Glu to Gln | < 0.001 | 5.8 | < 0.0001 | 0.26 | (G) | |
CGSS Exon1 | CGSS-SNP1 | Met* to Val | < 0.001 | 6.8 | < 0.0001 | 0.15 | (G) | |
Ci | XET 5′UTR | XET-SNP3 |  | 0.003 | 3.8 | 0.0073 | 0.41 | (T) |
SAUR Exon | SAUR-SNP1 | Glu to Gln | 0.007 | 2.4 | 0.0149 | 0.26 | (G) | |
Trmmol | XET 5′UTR | XET-SNP3 |  | 0.002 | 4.3 | 0.0040 | 0.41 | (T) |
Dabb Exon2 | Dabb-SNP2 | Ala to Val | 0.004 | 3.6 | 0.0100 | 0.45 | (T) | |
CGSS Exon1 | CGSS-SNP1 | Met* to Val | 0.008 | 2.3 | 0.0158 | 0.15 | (G) | |
H | PI 3′UTR | PI-SNP1 |  | 0.005 | 2.6 | 0.0651 | 0.38 | (T) |