Skip to main content

Table 2 Gene ontology enrichment analysis of the differentially expressed genes

From: Identification and characterization of nuclear genes involved in photosynthesis in Populus

Category GO term Description Number in input list Number in BG/Ref p-value FDR
Biological process GO:0006030 chitin metabolic process 5 23 2.00E-06 0.00018
GO:0006032 chitin catabolic process 5 23 2.00E-06 0.00018
GO:0008152 metabolic process 143 9587 1.10E-06 0.00018
GO:0006026 aminoglycan catabolic process 5 23 2.00E-06 0.00018
GO:0006022 aminoglycan metabolic process 5 24 2.60E-06 0.00018
GO:0005975 carbohydrate metabolic process 23 867 1.40E-05 0.00081
GO:0005976 polysaccharide metabolic process 9 156 1.90E-05 0.00095
GO:0044036 cell wall macromolecule metabolic process 6 62 2.60E-05 0.001
GO:0016998 cell wall macromolecule catabolic process 6 61 2.30E-05 0.001
GO:0071554 cell wall organization or biogenesis 9 171 3.80E-05 0.0014
GO:0000272 polysaccharide catabolic process 5 42 4.40E-05 0.0014
GO:0044238 primary metabolic process 106 7479 9.10E-05 0.0027
GO:0044092 negative regulation of molecular function 5 71 0.00054 0.014
GO:0043086 negative regulation of catalytic activity 5 71 0.00054 0.014
GO:0043170 macromolecule metabolic process 83 5955 0.0006 0.014
GO:0016052 carbohydrate catabolic process 6 117 0.00084 0.019
GO:0055114 oxidation reduction 18 857 0.0015 0.032
GO:0009056 catabolic process 10 359 0.0023 0.045
Molecular GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds 20 477 5.10E-08 1.00E-05
Function GO:0004857 enzyme inhibitor activity 13 188 3.60E-08 1.00E-05
  GO:0016798 hydrolase activity, acting on glycosyl bonds 20 505 1.30E-07 1.70E-05
  GO:0003824 catalytic activity 143 9307 2.70E-07 2.70E-05
  GO:0016787 hydrolase activity 56 2834 6.90E-07 5.40E-05
  GO:0004568 chitinase activity 5 23 2.00E-06 0.00011
  GO:0008061 chitin binding 5 24 2.60E-06 0.00011
  GO:0001871 pattern binding 5 24 2.60E-06 0.00011
  GO:0030247 polysaccharide binding 5 24 2.60E-06 0.00011
  GO:0030234 enzyme regulator activity 13 325 1.60E-05 0.00063
  GO:0030246 carbohydrate binding 12 312 4.90E-05 0.0017
  GO:0016491 oxidoreductase activity 36 1867 7.50E-05 0.0025
  GO:0043565 sequence-specific DNA binding 16 578 0.00015 0.0046
  GO:0030599 pectinesterase activity 7 137 0.00033 0.0091
  GO:0004866 endopeptidase inhibitor activity 5 67 0.00042 0.01
  GO:0030414 peptidase inhibitor activity 5 67 0.00042 0.01
  GO:0004713 protein tyrosine kinase activity 27 1395 0.00048 0.011
  GO:0005506 iron ion binding 15 584 0.00052 0.011
  GO:0004091 carboxylesterase activity 8 204 0.00073 0.015
  GO:0042802 identical protein binding 5 79 0.00088 0.017
  GO:0008236 serine-type peptidase activity 8 214 0.001 0.018
  GO:0017171 serine hydrolase activity 8 214 0.001 0.018
  GO:0020037 heme binding 13 504 0.0011 0.018
  GO:0046906 tetrapyrrole binding 13 504 0.0011 0.018
  GO:0043169 cation binding 39 2449 0.0015 0.021
  GO:0046872 metal ion binding 39 2445 0.0014 0.021
  GO:0043167 ion binding 39 2449 0.0015 0.021
  GO:0003700 transcription factor activity 17 805 0.0019 0.027
Cell component GO:0030312 external encapsulating structure 13 166 8.20E-09 4.10E-07
GO:0005618 cell wall 9 136 6.20E-06 0.00015
  1. FDR false discovery rate.