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Table 2 Gene ontology enrichment analysis of the differentially expressed genes

From: Identification and characterization of nuclear genes involved in photosynthesis in Populus

Category

GO term

Description

Number in input list

Number in BG/Ref

p-value

FDR

Biological process

GO:0006030

chitin metabolic process

5

23

2.00E-06

0.00018

GO:0006032

chitin catabolic process

5

23

2.00E-06

0.00018

GO:0008152

metabolic process

143

9587

1.10E-06

0.00018

GO:0006026

aminoglycan catabolic process

5

23

2.00E-06

0.00018

GO:0006022

aminoglycan metabolic process

5

24

2.60E-06

0.00018

GO:0005975

carbohydrate metabolic process

23

867

1.40E-05

0.00081

GO:0005976

polysaccharide metabolic process

9

156

1.90E-05

0.00095

GO:0044036

cell wall macromolecule metabolic process

6

62

2.60E-05

0.001

GO:0016998

cell wall macromolecule catabolic process

6

61

2.30E-05

0.001

GO:0071554

cell wall organization or biogenesis

9

171

3.80E-05

0.0014

GO:0000272

polysaccharide catabolic process

5

42

4.40E-05

0.0014

GO:0044238

primary metabolic process

106

7479

9.10E-05

0.0027

GO:0044092

negative regulation of molecular function

5

71

0.00054

0.014

GO:0043086

negative regulation of catalytic activity

5

71

0.00054

0.014

GO:0043170

macromolecule metabolic process

83

5955

0.0006

0.014

GO:0016052

carbohydrate catabolic process

6

117

0.00084

0.019

GO:0055114

oxidation reduction

18

857

0.0015

0.032

GO:0009056

catabolic process

10

359

0.0023

0.045

Molecular

GO:0004553

hydrolase activity, hydrolyzing O-glycosyl compounds

20

477

5.10E-08

1.00E-05

Function

GO:0004857

enzyme inhibitor activity

13

188

3.60E-08

1.00E-05

 

GO:0016798

hydrolase activity, acting on glycosyl bonds

20

505

1.30E-07

1.70E-05

 

GO:0003824

catalytic activity

143

9307

2.70E-07

2.70E-05

 

GO:0016787

hydrolase activity

56

2834

6.90E-07

5.40E-05

 

GO:0004568

chitinase activity

5

23

2.00E-06

0.00011

 

GO:0008061

chitin binding

5

24

2.60E-06

0.00011

 

GO:0001871

pattern binding

5

24

2.60E-06

0.00011

 

GO:0030247

polysaccharide binding

5

24

2.60E-06

0.00011

 

GO:0030234

enzyme regulator activity

13

325

1.60E-05

0.00063

 

GO:0030246

carbohydrate binding

12

312

4.90E-05

0.0017

 

GO:0016491

oxidoreductase activity

36

1867

7.50E-05

0.0025

 

GO:0043565

sequence-specific DNA binding

16

578

0.00015

0.0046

 

GO:0030599

pectinesterase activity

7

137

0.00033

0.0091

 

GO:0004866

endopeptidase inhibitor activity

5

67

0.00042

0.01

 

GO:0030414

peptidase inhibitor activity

5

67

0.00042

0.01

 

GO:0004713

protein tyrosine kinase activity

27

1395

0.00048

0.011

 

GO:0005506

iron ion binding

15

584

0.00052

0.011

 

GO:0004091

carboxylesterase activity

8

204

0.00073

0.015

 

GO:0042802

identical protein binding

5

79

0.00088

0.017

 

GO:0008236

serine-type peptidase activity

8

214

0.001

0.018

 

GO:0017171

serine hydrolase activity

8

214

0.001

0.018

 

GO:0020037

heme binding

13

504

0.0011

0.018

 

GO:0046906

tetrapyrrole binding

13

504

0.0011

0.018

 

GO:0043169

cation binding

39

2449

0.0015

0.021

 

GO:0046872

metal ion binding

39

2445

0.0014

0.021

 

GO:0043167

ion binding

39

2449

0.0015

0.021

 

GO:0003700

transcription factor activity

17

805

0.0019

0.027

Cell component

GO:0030312

external encapsulating structure

13

166

8.20E-09

4.10E-07

GO:0005618

cell wall

9

136

6.20E-06

0.00015

  1. FDR false discovery rate.