Table 1 Canola CBL and CIPK genes identified and their characteristics
From: Identification and characterization of CBL and CIPK gene families in canola (Brassica napus L.)
gene | GenBank Acc No. | EST count | Arabidopsis ortholog/AGI No. | Rice ortholog/locus | No. Amino acids | Protein M.W.(kDa) | pI | No. of EF-hands | Palmitoylation sites | Myristoylation sites |
|---|---|---|---|---|---|---|---|---|---|---|
BnaCBL1 | JQ708046 | 6 | AtCBL1/At4g17615 | OsCBL1/LOC_Os10g41510 | 213 | 24.6 | 4.57 | 4 | yes | yes |
BnaCBL2 | JQ708048 | 11 | AtCBL2/At5g55990 | n.d. | 226 | 25.9 | 4.79 | 4 | yes | n.d. |
BnaCBL3 | JQ708049 | 25 | AtCBL3/At4g26570 | OsCBL3/LOC_Os03g42840 | 226 | 25.8 | 4.67 | 4 | yes | n.d. |
BnaCBL4 | JQ708050 | 3 | AtCBL4/At5g24270 | OsCBL7/LOC_Os02g18880 | 221 | 25.4 | 4.68 | 4 | yes | yes |
BnaCBL9 | JQ708051 | 18 | AtCBL9/At5g47100 | n.d. | 213 | 24.4 | 4.5 | 4 | yes | yes |
BnaCBL10 | JQ708047 | 16 | AtCBL10/At4g33000 | OsCBL10/LOC_Os01g51420 | 249 | 28.8 | 4.87 | 4 | yes | n.d. |
BnaCIPK1 | JQ708052 | 28 | AtCIPK1/At3g17510 | OsCIPK21/LOC_Os07g44290 | 444 | 50 | 6.3 | 0 | yes | n.d. |
BnaCIPK3 | JQ708061 | 13 | AtCIPK3/At2g26980 | OsCIPK32/LOC_Os12g03810 | 440 | 50.3 | 6.69 | 0 | n.d. | n.d. |
BnaCIPK5 | JQ708062 | 11 | AtCIPK5/At5g10930 | OsCIPK16/LOC_Os09g25090 | 431 | 49.4 | 6.88 | 0 | yes | n.d. |
BnaCIPK6 | JQ708063 | 199 | AtCIPK6/At4g30960 | OsCIPK5/LOC_Os01g10890 | 437 | 49 | 8.79 | 0 | yes | n.d. |
BnaCIPK7 | JQ708064 | 13 | AtCIPK7/At3g23000 | OsCIPK4/LOC_Os12g41090 | 414 | 46.5 | 9.33 | 0 | yes | n.d. |
BnaCIPK8 | JQ708065 | 26 | AtCIPK8/At4g24400 | OsCIPK8/LOC_Os01g35184 | 451 | 51 | 8.32 | 0 | n.d. | n.d. |
BnaCIPK9 | JQ708066 | 28 | AtCIPK9/At1g01140 | OsCIPK9/LOC_Os03g03510 | 447 | 50.4 | 7.93 | 0 | yes | n.d. |
BnaCIPK10 | JQ708053 | 14 | AtCIPK10/At5g58380 | OsCIPK2/LOC_Os07g48100 | 463 | 52.9 | 8.13 | 0 | yes | n.d. |
BnaCIPK11 | JQ708054 | 30 | AtCIPK11/At2g30360 | n.d. | 443 | 49.8 | 8.26 | 0 | yes | n.d. |
BnaCIPK12 | JQ708055 | 35 | AtCIPK12/At4g18700 | OsCIPK12/LOC_Os01g55450 | 491 | 55 | 7.81 | 0 | yes | n.d. |
BnaCIPK14 | KC414027 | 9 | AtCIPK14/At5g01820 | OsCIPK19/LOC_Os05g43840 | 431 | 48.6 | 9.06 | 0 | yes | n.d. |
BnaCIPK15 | JQ708056 | 9 | AtCIPK15/At5g01810 | n.d. | 423 | 48 | 8.61 | 0 | n.d. | n.d. |
BnaCIPK17 | JQ708057 | 6 | AtCIPK17/At1g48260 | n.d. | 427 | 47.7 | 7.68 | 0 | yes | n.d. |
BnaCIPK23 | JQ708058 | 15 | AtCIPK23/At1g30270 | OsCIPK23/LOC_Os07g05620 | 482 | 53.4 | 9.25 | 0 | yes | n.d. |
BnaCIPK24 | JQ708059 | 11 | AtCIPK24/At5g35410 | OsCIPK24/LOC_Os06g40370 | 453 | 51.6 | 9.2 | 0 | n.d. | n.d. |
BnaCIPK25 | KC414028 | 18 | AtCIPK25/At5g25110 | n.d. | 455 | 51.6 | 8.54 | 0 | yes | n.d. |
BnaCIPK26 | JQ708060 | 18 | AtCIPK26/At5g21326 | OsCIPK32/LOC_Os12g03810 | 441 | 50 | 8.11 | 0 | n.d. | n.d. |