Skip to main content

Table 1 Grapevine closest homologues to Arabidopsis core clock proteins

From: Circadian oscillatory transcriptional programs in grapevine ripening fruits

Protein

ID

Length (aa)

Query cover (%)

Identitya(%)

Significant in clusterb

CCA1 (AT2G46830, 608 aa)

VvLHY

VIT_15s0048g02410

771

100

40

No significant

VvRVE1

VIT_04s0079g00410

479

39

71

S4, SF4, V2

LHY (AT1G01060, 645 aa)

VvLHY

VIT_15s0048g02410

771

100

44

No significant

VvRVE1

VIT_04s0079g00410

479

23

79

S4, SF4, V2

RVE1 (AT5G17300, 387 aa)

VvLHY

VIT_15s0048g02410

771

39

54

No significant

VvRVE1

VIT_04s0079g00410

479

92

45

S4, SF4, V2

PRR7 (AT5G02810, 727 aa)

VvPPR7_1

VIT_06s0004g03650

482

70

52

SF3

VvPRR7_2

VIT_13s0067g03390

769

95

44

No significant

VvPPR9

VIT_15s0048g02540

641

27

55

No significant

PRR9 (AT2G46790, 468 aa)

VvPPR9

VIT_15s0048g02540

482

93

58

No significant

VvPRR7_2

VIT_13s0067g03390

769

60

48

No significant

PRR5 ( AT5G24470, 667 aa)

VvPRR5

VIT_16s0098g00900

688

82

41

No significant

VvPPR9

VIT_15s0048g02540

482

76

59

No significant

TOC1 ( AT5G61380, 618 aa)

VvTOC1

VIT_17s0000g06570

551

93

51

No significant

VvTOC1-like

VIT_17s0000g06520

129

24

55

No significant

LUX (AT3G46640, 323 aa)

VvLUX

VIT_06s0004g05120

311

97

53

No significant

GI (AT1G22770, 1173 aa)

VvGI

VIT_18s0157g00020

1170

99

77

No significant

ELF3 (AT2G25930, 695 aa)

VvELF3_1

VIT_04s0008g00660

725

99

41

No significant

VvELF3_2

VIT_09s0002g02680

740

99

32

V2

ELF4 (AT2G40080, 111 aa)

VvELF4

VIT_13s0067g00860

145

82

69

No significant

  1. aCoverage of the Arabidopsis protein by the grapevine predicted protein sequence.
  2. bClusters of significant transcripts in Figures 2, 3 and 4 and Additional files 5 and 10.